KEGG   Achromobacter sp. E1: V6V88_00625
Entry
V6V88_00625       CDS       T10430                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
achm  Achromobacter sp. E1
Pathway
achm02020  Two-component system
achm02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:achm00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    V6V88_00625 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    V6V88_00625 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:achm03021]
    V6V88_00625 (rpoN)
Transcription machinery [BR:achm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     V6V88_00625 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID DUF2766
Other DBs
NCBI-ProteinID: XAZ79075
Position
131937..133382
AA seq 481 aa
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLAENPLLDREDEP
ATAEDRAESERESSVQDDEPAAERETAIDEMPGSGGVYPDDDASLPEAARPDTLREHLLG
QLALTRAAPRDAALASLLIDELDENGYLGSPLDEILGWLPAEMEPDMDELRAALSLLQSF
DPVGIGARDMAECLQLQLRNPDLTLLPEAADPVVLACARRICAEHLPLLATGNAARLCAA
VGCDETTFRAAHSLILRLEPRPGRAWTVPAAEYAVPDVIVRKTRRGWQATLNSAAVPRLQ
INGLYAQMLGNQKESAHAGLQAQLQQAKWMIRNVEQRFDTILRVSQAIVERQTAFFSQGP
AAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLELKRFFGTGVSTEGGDATSATA
VQTYIRQMVADENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPAALRKAQASA
R
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgcaaaatattgtacctatgacccgtccaattttagaactgcggcctggccagcacctg
acgctgaccccacaacttcagcaatcgatccgattgttgcagttgtccacgctcgacctt
gaagcggaaatctcgcaagtgctggccgagaatcccctgctggatcgcgaggacgagccg
gcgacggcggaggatcgggccgaatccgagcgcgaatcttcggttcaggacgacgaaccg
gcggccgagcgcgagaccgccatcgacgagatgcctggctcgggcggggtgtatcccgac
gacgacgccagcctgcccgaggcggcgcggccggacacgctgcgcgaacatctgctgggt
cagcttgccctgacgcgcgccgcgccgcgcgatgccgcgctggcgtccctgctgatcgac
gaactggacgaaaacggctacctgggttcgccgctggatgaaattctgggttggctccct
gccgaaatggagcccgacatggacgagctgcgcgccgccctgtcgcttctgcaatcgttc
gacccggtgggcatcggcgcgcgcgacatggctgaatgcctgcaactgcaactgcgcaat
cccgatctcaccttgctgccggaggcggctgaccccgtcgtgcttgcctgtgcgcgccgg
atctgcgccgagcacctgccgctgttggcaaccggcaacgccgcgcgtctgtgtgcggcg
gtcggctgcgacgagaccacgttccgcgcggcgcattcgctgatcctgcgcctggaaccc
cggccgggccgggcctggaccgtgccggcggccgagtacgcagtgccggacgtcatcgtc
cgcaagacgcggcgcggctggcaggccacgctgaatagcgccgcggtgcctcggctgcag
atcaatgggctgtacgcccagatgctgggcaaccagaaggaatccgcccacgccggcctg
caggcccagctgcagcaggccaaatggatgatccgcaacgtggagcagcgctttgacacc
atcctgcgcgtgtcgcaggccatcgtcgagcgtcagacggctttcttcagccaggggccg
gcggcgatgcgtccgctcatcctgaaggacatcgccggtgagctgggcttacatgaatcg
accatttcgcgggccacaacacagaagtacatgctcactccgttcggcacgctggagctc
aagcgcttctttggaacaggcgtgtcgacagaaggcggcgacgccacgtcggccaccgcg
gtgcagacctacatccgccagatggtggccgacgagaaccgcgccaagccgttgtcggat
agccagatcatgcaaaaactggccgatcaggggatagtgattgcgcgccggacggtggca
aagtaccgtgaagcgctgcggattgcccccgccgcgctgcgcaaggcgcaagcctccgca
cgctga

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