Actinoplanes sp. NBRC 14428: Asp14428_34660 Help Entry Asp14428_34660    CDS       T08315                                  Symbol lig_1 Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism actr  Actinoplanes sp. NBRC 14428 Pathway actr03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:actr00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     Asp14428_34660 (lig_1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:actr03400]     Asp14428_34660 (lig_1) Enzymes [BR:actr01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      Asp14428_34660 (lig_1) DNA repair and recombination proteins [BR:actr03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      Asp14428_34660 (lig_1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_N DNA_ligase_A_M Motif Other DBs NCBI-ProteinID:  BCJ51991 Position 3714438..3715508 Genome browser AA seq 356 aa AA seqDB search MTDRLDEYRRKRDARRTPEPVPRTRPRPTGGNRFVIQQHHARSLHWDVRLERDGVLVSFA VPRGLPRDRARNHLAKHTEDHPLEYLGFAGEIPAGEYGGGHMTIHDHGTYEADKWRDDEI GVTFHGDRTSGRYVFFRTGGQDWMVRRMDPPEPGWESMPEAVEPMLAARAAGLPPDDKDW GYELSWAGRRTLAYVSGGRVRLTDATGTDVTSWYPEIRPLGEALAPLEAVLDGEIVAFDG PAVSPQSLERRKAPRDSAAARRAAERTPVQYLIYDLLWLEGHSTLELVRYAERRELLDGL NLAGDNWQTPPYFPGGGEFALETAAAQGLSGVVAKRLDSPYLPGRRSRLWLTVGAS NT seq 1071 nt NT seq  +upstreamnt  +downstreamnt atgaccgaccgcctggacgagtaccggcgcaagcgcgacgcccgccgtaccccggagccc gtgccccgcacccgcccccggccgaccggcgggaacaggttcgtcatccagcagcaccac gcccgcagcctgcactgggacgtccggctcgaacgggacggcgtgctcgtgtcgttcgcc gtgccgcgcggtctcccccgcgaccgcgcccggaaccacctggccaaacacaccgaggac cacccgctggaatacctcggcttcgccggggagatcccggccggcgaatacggcggcggg cacatgaccatccacgaccacggcacctacgaggcggacaagtggcgcgacgatgagata ggtgtcacgttccacggtgaccgcacgtccggccgctacgtcttcttccggaccggcggg caggactggatggtccggcggatggacccgccggaacccggctgggagagcatgcccgag gccgtcgaacccatgctcgctgcccgggccgccggcctgccgcccgacgacaaggactgg gggtacgagctgagctgggccggccgccgcaccctcgcgtacgtgtcgggcggccgggtg cgcctcaccgacgccacgggaaccgacgtgacctcctggtatccggagatccgcccgctc ggggaggcgctcgcgccgctggaggccgtactcgacggtgagatcgtggcgttcgacggc ccggcggtgtcgccgcagtcgctggagcgacgcaaggccccgcgggactccgccgccgcc cggcgcgcggcggaacgcacgccggtgcagtacctgatctacgacctgttgtggctggaa gggcactccacactggagctcgtccgctacgccgaacgccgcgagctgctcgacggcctc aacctggccggcgacaactggcagacgccgccctacttccccggcggcggcgagttcgcg ctggagaccgcggcggcgcaggggctgtccggcgtggtggcgaagcgcctcgactcgccg taccttccggggcgccgcagccgcctctggctcaccgtcggcgcgagctga

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