KEGG   Anoplopoma fimbria (sablefish): 129113389
Entry
129113389         CDS       T09102                                 
Name
(RefSeq) platelet-derived growth factor receptor beta-like isoform X1
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04010  MAPK signaling pathway
afb04020  Calcium signaling pathway
afb04510  Focal adhesion
afb04518  Integrin signaling
afb04519  Cadherin signaling
afb04540  Gap junction
afb04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:afb00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    129113389
   04020 Calcium signaling pathway
    129113389
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    129113389
   04519 Cadherin signaling
    129113389
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    129113389
   04540 Gap junction
    129113389
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    129113389
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:afb01001]
    129113389
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:afb04090]
    129113389
Enzymes [BR:afb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     129113389
Protein kinases [BR:afb01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   129113389
CD molecules [BR:afb04090]
 Proteins
  129113389
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Pkinase Ig_PDGFR_d4 I-set Ig_3 VEGFR1-3_N_Ig-like Ig_2 ig Ig_VEGFR-1-like_5th V-set C2-set_2 VEGFR-1-like_Ig-like Stevor Haspin_kinase Syndecan RIFIN
Other DBs
NCBI-GeneID: 129113389
NCBI-ProteinID: XP_054481619
Position
24:complement(120469..143839)
AA seq 1046 aa
MKAPTRGWTGNLNVLHFLLAVFLVLHEGGVCLELQPSTSEVLLNSNSNFTVVCSGWSQVT
WRIPHDSQVDGVVVENQGSSSILQLFNATWRNSGRYTCEEASSYQSRDVDIFIPGQGPEE
WFVPLGPGVVMKEAEEDTIPCVVSDPRLNVSLYERPGRMPVTGTTYEPGRGFTGRLNDTS
YVCSAARGDEERESQVYYVFSIVVPKVMEVDLTVSSSVMKQGEVLEVNCTVKDAEMVFFS
WDFPRRQEVEPLTDFLPNRIRSFINISMATVADSGVYVCVVQDTMQDRTVKKNITVTVLD
RGYVYLWPSGETNVSSLLLHTVEFRVEVDARPPTVLWTKDNNTVATETTSVTTTQLTGSR
YVSTLTLVEVQMDQTGSYTATVSNEDDVEEVFFHLEVKAPPRITSLSEAGSKAFLCVSEG
APPPSVTWYTCHSSHRCSNLTGGWRSQSAASEGVALQENVTKVEERGVTQVGSVLTLQSL
SSVSAVRCEAKNSAGRRARDLRVLSTSLLSQVAVLAAVLVLVVVAVVFLIILIFLWRKKP
RYEVRWKLMESVSPDGQQYTYLDPANLTYNSSWEVPRENVVLGQVLGSGAFGRVVMATVS
SLLGSHSSTNVTVKMVKPSSAAAQSLMSELKVLAHLGPHLNVVNLLGACTRGGPVYLITE
FCRHGDLVNYLQRNKHTFLQRDTKSDSDGGYMDMNKEESAQYVVMKELSYADIEPAVYET
PYAPAVTCVSACAVTCRSLSDQQEAPSVLLSDSPLLSVNDLLSFSYQVSQAMDFLSSRSC
VHRDLAARNVLVSEGKLVKICDFGLARDLMKDKDYIARGNSFLPVKWMSPESIFQNIYSS
KSDVWSYGVLLWEIFSLGVSPYPDLPLNQNFYSSLQKGYRMSRPELAPLDMFDLMEQCWQ
QKPESRPGFSSLVVSVGNMLTDDYKKRYLQLTEDFLNGESPAVVGSRRSPSTSAGQNDGQ
TDTSGSPAPQVNVQLFKAEPEEAGSSHGAYIIANNDVTVETSGSAALDAVSSQRSESQEV
TSSEDRQEAEEPPDSSRGLEEEESCL
NT seq 3141 nt   +upstreamnt  +downstreamnt
atgaaggctccaaccagagggtggacaggaaatctgaatgtgctgcacttcctgttagct
gtgttcctggttcttcatgaagggggggtctgtctggagctgcagccttcaacctctgaa
gttctgctcaactcaaactccaacttcactgtggtatgttccgggtggagtcaggtgacg
tggcggatacctcacgactctcaggtggatggggttgtagttgagaatcaggggtccagc
agcatcctgcagctctttaacgccacctggaggaactctgggagatacacctgtgaggag
gcgtcgtcctatcagagcagagatgtggacatattcatacctggtcaaggtccagaggaa
tggttcgttccgctgggtccaggtgtggtgatgaaggaggcagaggaagacaccatcccc
tgcgtggtttccgacccgcggctcaacgtttcgctgtacgaacgtcccggcaggatgccg
gttaccgggacgacgtacgagccgggccgcggcttcacgggtcgactgaacgacacgtca
tacgtgtgctcggccgcccgaggagacgaagagagagagtcccaggtgtactacgtcttc
agcatcgtagtccctaaggtgatggaggtggacctgacggtgtccagcagtgtgatgaag
cagggtgaggttctcgaggtaaactgcactgtgaaagacgctgagatggtcttcttctcc
tgggacttcccccgcagacaggaagtcgagcctctgacggattttctgcccaatcggatc
cgctccttcattaacatctccatggcaacagtggcagattctggtgtgtatgtgtgtgtg
gtgcaggacacaatgcaggatcgaacagtgaagaaaaacatcacagtgacagtactggat
cgaggttacgtctacctgtggccttcaggtgagaccaacgtgtcgtctctgctcctccac
acggtggagttcagggtggaggtcgacgcccgcccccccaccgtcctctggaccaaagac
aacaacaccgtcgccacggaaaccacctccgtcaccaccacacagctgacgggaagcagg
tacgtgagcacactgacgctggtggaagtccagatggatcagacaggaagttacacagca
acggtttctaacgaggacgacgttgaggaagtcttcttccacctggaggtcaaagcgccc
cccaggatcacgtctctgtcggaggccggcagtaaggcatttctgtgcgtcagcgaggga
gctccgcccccatctgtcacctggtacacctgtcacagctcacacaggtgcagtaatttg
acgggcggctggaggagccaatcagcagcctcggagggcgtggctctgcaggagaacgtc
actaaggtggaggagagaggcgttacccaggtaggcagtgtgttgactctgcagagtctc
agctccgtgtcagctgttcgctgtgaagccaagaactctgcaggacgccgagccagagac
ctgcgagtactgtccacctctcttctgtctcaggttgcagtcttggcagcagttctggtt
ctggtcgtggttgccgtcgtcttcctcatcatcctcatcttcctctggaggaagaagcct
cgttatgaagtccgttggaagttgatggagtcggtcagtcctgacggacagcagtacaca
tacctggacccggccaacctgacctacaactccagctgggaagtacctcgagaaaatgta
gtactaggtcaggtgttgggttcaggtgcgtttggtcgggtcgtcatggcgaccgtctcc
agtctgctcggctctcattcttcgactaacgttacggtgaagatggtcaaacccagcagc
gctgcagctcagtctctgatgtcagagttaaaggttctggctcatctcggtcctcacctg
aacgtggtcaacctgctgggagcgtgcacgagaggaggccctgtctatctgatcactgag
ttctgtcgccatggagacctggtgaactacctgcaaaggaacaaacacaccttcctacag
agagacaccaagagtgacagtgatggaggttacatggacatgaataaagaggagagcgct
cagtacgtcgtcatgaaggagctcagctacgccgacatcgaacccgcggtgtacgagacg
ccgtacgcaccagcagtaacctgtgtgtctgcctgtgcagtaacctgtcgttctctctca
gaccagcaggaggcgccgtctgtcctcctcagtgactctcctcttctgagtgtcaacgac
ctcctcagcttctcctaccaggtctctcaggccatggacttcctctcctccagaagttgt
gtccacagagacctggctgcgagaaacgtcctggtcagtgaggggaagctggtgaagatc
tgtgactttggtttggccagagatctgatgaaggacaaggactacatcgccagaggaaac
agcttcctacccgtgaagtggatgtctccagagagtattttccagaacatttacagctct
aagagtgatgtctggtcttatggagtcttactgtgggagatcttctctcttggtgttagt
ccgtaccctgacctccctctgaaccagaacttctactcgtctctgcagaaaggctacagg
atgagtcgccctgaactggctcctctggacatgtttgatctgatggaacagtgctggcag
cagaaacctgagtccagacctggtttctcctcgttggtcgtctccgtcggcaacatgttg
actgacgactacaaaaagcgttacctccagctgaccgaggacttcctgaacggggagagt
ccagctgtggtcggatccagacggagtccttcaacatctgctggacagaacgacggacag
acggacacaagcggaagccccgcccctcaagtgaacgttcaactgtttaaggctgagcca
gaggaggcaggatcctcccacggcgcttacatcatcgccaacaatgacgtcaccgtggaa
accagtggcagcgctgcgctggacgcagtcagctctcagcggtcagagtcacaggaagtg
acatcatcagaggacagacaggaagccgaggaacctccggattcatcccgcggccttgag
gaagaggagagctgcctgtga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (16)   
   Pfam (16)   
All databases (28)   

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