KEGG   Allocoprobacillus halotolerans: NMU03_13885
Entry
NMU03_13885       CDS       T09839                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
ahq  Allocoprobacillus halotolerans
Brite
KEGG Orthology (KO) [BR:ahq00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ahq03009]
    NMU03_13885 (rlmD)
Enzymes [BR:ahq01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     NMU03_13885 (rlmD)
Ribosome biogenesis [BR:ahq03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    NMU03_13885 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Cons_hypoth95 TRM5-TYW2_MTfase Methyltransf_15 MTS N6_N4_Mtase Methyltransf_25 TRM RrnaAD Methyltr_RsmB-F Methyltransf_4 PCMT UPF0020 PrmA Methyltransf_11 N6_Mtase DOT1 PPV_E1_C Methyltransf_32 FtsJ
Other DBs
NCBI-ProteinID: UTY38687
Position
2380436..2381431
AA seq 331 aa
MKEPYYYRNKVIVAFNQKYEYGLYEETSHRIVPMKSCLLHDEVTHQVLLQIQKILKKYRV
SIYDEKKNKGFLKHVFIRRAISTNQTLVVLVAREPVMKGSKNFCQELIKACPTVKSVVLN
INSRQTSVVLSKQEKVLYGKGFIVDELCGLTFKISAQSFYQVNHEQCTYLYHKLLSLLDL
HKNDVILDTYCGIGTIGMFLAQYVDTVIGVELNKEAYKDALNNAKMNKIENIHFVNDDAS
HFMHELSKQKQKIDCVVMDPPRAGSTKTFIEAIKVLQPRQVIYVSCDPTTQARDLKMFEK
IGYKGKDVYPVDMFPHTNHVETCMLLQRRTM
NT seq 996 nt   +upstreamnt  +downstreamnt
atgaaagagccttattattatcgtaataaagtgattgtggcctttaatcaaaaatatgaa
tatggcctatatgaagaaacatcccatcgtattgtaccaatgaaatcctgtttgttgcat
gatgaagtgacacatcaggttttgttgcagattcaaaagatattaaagaaatatcgtgtt
tccatatatgatgaaaagaaaaataaaggttttttaaaacatgtttttattcgtcgtgct
atttcaaccaatcagacacttgttgtattggttgccagagaaccagtcatgaaaggcagt
aaaaacttttgccaggaactgattaaagcatgtccaactgtaaaatctgttgttcttaat
attaatagtagacaaacgagtgttgttttatctaaacaggaaaaagttttatatggaaaa
ggttttattgtggatgaattatgtggattgacttttaaaatatcagcacaatctttttat
caagtgaatcatgaacaatgtacttatttatatcataaacttttatctttgttagactta
cataaaaatgatgtcattttagatacttattgtggtattggtacaattggtatgttttta
gctcaatacgtagatactgtgataggtgttgaattaaataaagaggcttataaagatgct
cttaacaatgccaagatgaataagattgaaaacattcattttgttaatgatgatgcatcg
cattttatgcatgaattatcaaaacaaaagcaaaagatagattgtgttgtgatggaccca
ccacgtgctgggagtacaaaaacatttattgaggcaatcaaggtattacagcctcgtcaa
gtgatttatgtatcttgtgatccaactacacaagcacgtgatttaaagatgtttgaaaag
attggttataaaggaaaagatgtatatcctgttgatatgtttcctcacacaaatcatgtg
gagacttgtatgttgctacaaagacgaactatgtag

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (21)   
   Pfam (21)   
All databases (22)   

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