KEGG   Anomalospiza imberbis (cuckoo-finch): 137483095
Entry
137483095         CDS       T11605                                 
Symbol
PDGFRB
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
aib  Anomalospiza imberbis (cuckoo-finch)
Pathway
aib04010  MAPK signaling pathway
aib04020  Calcium signaling pathway
aib04510  Focal adhesion
aib04518  Integrin signaling
aib04519  Cadherin signaling
aib04540  Gap junction
aib04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:aib00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    137483095 (PDGFRB)
   04020 Calcium signaling pathway
    137483095 (PDGFRB)
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    137483095 (PDGFRB)
   04519 Cadherin signaling
    137483095 (PDGFRB)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    137483095 (PDGFRB)
   04540 Gap junction
    137483095 (PDGFRB)
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    137483095 (PDGFRB)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:aib01001]
    137483095 (PDGFRB)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:aib04090]
    137483095 (PDGFRB)
Enzymes [BR:aib01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     137483095 (PDGFRB)
Protein kinases [BR:aib01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   137483095 (PDGFRB)
CD molecules [BR:aib04090]
 Proteins
  137483095 (PDGFRB)
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase Ig_3 I-set VEGFR1-3_N_Ig-like ig Ig_2 Ig_VEGFR-1-like_5th V-set VEGFR-1-like_Ig-like C2-set_2 BACON_2 DUF4452
Other DBs
NCBI-GeneID: 137483095
NCBI-ProteinID: XP_068062031
Position
15:complement(12061406..12088448)
AA seq 1294 aa
MFFFTHHTRPPGVNREFCSAKGPHRGWREEVGGAPLLIGEAASPLLLLPRSLLFIHARTH
ACTSLGPGVCSTLGSEEAEPPPSWAGGCTGHCSDALEEQSRGLAAAQPWHSFASPFDFIF
IFFSPPPFHFISFFPSLSPLSGKALPAGEGWEGRESLSRQQIESLEEERKEFRSLPGGTC
GAGTRLVGPCSRTQTPGPEPSMLCPTLKTCLWLLILTGLLDETFGDSRPHIEPRDTELVL
SLHSTFSLLCYGDRELVWEREGQPLAASLEHRDGVFVSNLTLRNVTGHHTGEYTCTYSPE
QAPEPAERRALYIYVPDPSLVFLPAVTSEEIFIFITGYTEAVIPCRVTNPQMQVTLYEKK
VENPIPATYDPQQGFKGFFEDKTYFCRTFVDDQEVDSDTFYVYRIQVSSVNVSISAVQTM
VRQGENITVMCTVSGNELVNFNWDYPRKQAGKAVEPVTDFLPGSIHEIRSILIIQNAELE
DSGTYVCNVSEGYHEKTDRKNITVQVIERGFVHFHTHLPSMVYAEVHKSHTIQVEVEAYP
QPSIVWLKNNKTLTMESSSEFTITSRNLSETRYQTALVLVRVKQEEGGVYTIRASNEDDE
QELSFHLQINVPAKVVDLKENGSASSGEQTVTCSAEGMPQPEISWSTCSDIKWCSTKGEP
TRLLGNESAEIGVQTNASYHAERQLYRVNSTLQLHRVHEPLLLRCTVHNFLGTNSQDITL
VPHALPFKVVIISVILALLVLTVISLIILIVLWQKKPRYEIRWKVIESVSSDGHEYIYVD
PMQLPYDSTWEVPRDKLVLGRTLGSGAFGRVVEATAHGLSHSRSTMKVAVKMLKSTARSS
EKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQS
YGEKARREAELYGNTPKEDHVHSHLSMSVESDGGYMDMSKDDSLDYVPMSDMKGEVKYAD
IESSNYGTPYELDSYSPSAPERTDRVTLINESPLLSYMDLVGFSFQVANGMEFLASKNCV
HRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTL
SDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMSKPTHASDEIYNIMQKCWEE
KFEIRPSFSQLVVLMGNLLVDCYRKRYQQVDEEFMKSDHPAVVRTRPTIPVLNNTRLAAS
SPTSNILYTAVHQNGGENDYIIPLPDPKPEANCDLPQEASISRASSMLNEANTSSTISCD
SPLGLQQDEEQESDPQPGCQEPTTGHQEVEESFL
NT seq 3885 nt   +upstreamnt  +downstreamnt
atgtttttcttcacccatcacactcgtccgccgggcgttaatcgcgagttctgctccgca
aagggtccccacagagggtggagggaggaagtcggaggagctccgctcctcattggcgaa
gcagcctccccccttctcctcctcccgaggtctcttttatttatacacgcacgcacacac
gcgtgcacatccctcggccccggggtttgctccacactcgggtccgaggaggcagaaccc
ccacccagctgggctgggggctgcacagggcactgctcagatgcactagaggagcagagc
aggggcttggctgcagcccagccttggcacagctttgcctctccttttgattttattttt
atttttttttcccctcctcccttccacttcatttctttctttccctctctttcgccttta
agtggaaaagccttgccagctggggaaggctgggagggcagggagagcctcagcaggcag
cagatagagagtttggaggaggagaggaaggaatttcggagccttcccggtgggacgtgc
ggcgcaggcactcggctggtgggaccctgctcaaggactcagacacccggcccagagccc
agcatgctgtgccccactctcaagacgtgtctctggctcctcatcctcactggtctgctg
gatgagacatttggggacagcaggccacacatcgaacccagagacactgagctggtcctc
agcctccacagcaccttctccctcctgtgctacggggacagagagctggtctgggaacgg
gaggggcagcccctcgctgcctcgctggagcacagggacggtgtctttgtcagcaatctc
accctcaggaatgtgacaggccatcacaccggggagtacacatgcacctacagccctgag
caggctccagagccagcagagaggagagccctctacatctacgttccagatccctccctg
gttttcctccccgcggtcacctctgaagagatcttcatcttcatcacgggctacacagag
gctgtcatcccatgccgtgtgaccaacccacagatgcaggtcaccctctatgagaagaag
gtggagaaccccattccagctacatatgatccacaacagggatttaaaggcttctttgag
gataaaacctatttctgccggacgtttgtggatgaccaggaggtggattcagacactttc
tacgtgtacaggatccaggtgtcatctgtgaacgtctccatcagcgcagtgcagaccatg
gtgcgccagggagaaaacatcaccgtcatgtgcaccgtgagcggcaatgagctggtcaac
ttcaactgggattatccccgcaagcaagcagggaaggctgtggagccagtgactgacttc
ctgcctggatccattcatgagatccgctccatcctcatcatccagaatgcagagctggag
gacagtgggacctatgtctgcaatgtgtccgagggctaccatgagaaaacggaccggaag
aacatcactgtccaagtgatcgagcgtggctttgtgcacttccacacccacctgcccagc
atggtctatgccgaggtccacaagagccacactatccaggtggaagtggaggcttatccc
caacccagcattgtgtggctgaagaacaataagacactgaccatggagagcagcagtgag
ttcaccatcaccagcaggaacctgtcagaaaccaggtaccagacagctctggtgctggtg
cgggtgaagcaggaagaaggaggagtttacaccattcgagcttccaatgaggatgatgag
caggagctctccttccatctgcagataaatgtgccagctaaagtggtggatctcaaggag
aacggcagtgccagcagtggggagcagactgtaacatgctctgctgaaggcatgccccag
ccagagatcagctggtcgacttgcagcgacatcaaatggtgcagcaccaagggagagccc
acccggctgctggggaacgagtcggctgagatcggcgtgcagaccaacgcctcgtaccac
gcagagcggcagctgtaccgcgtcaacagcaccctgcagctgcacagggtgcacgagcca
ctgctcctcaggtgcaccgtgcacaacttcctgggcaccaactcccaggacatcactctg
gtcccacacgccttgccgttcaaggtggtcatcatttctgtcatcctggccttgctggtc
ctcactgtgatctccctgatcatcctgatcgtgctgtggcagaagaaacctcgttatgaa
atccgctggaaggtgattgagtcagtcagctctgatgggcacgagtacatctatgtggat
cccatgcagctcccttatgactccacctgggaggtgcccagggacaagctggtgttagga
cgcactctcggctccggtgcctttggtcgtgtggtggaggcaacagcccatggcctgagc
cattcacggtccaccatgaaagtggcagtcaaaatgctcaagtccacagcccgcagcagt
gagaagcaagccctcatgtccgagctgaagatcatgagccacctgggacctcacctcaac
atcgtcaacttgctgggggcctgcaccaaaggagggcccatctacatcatcaccgagtac
tgccgctacggggacctggtggattacctgcaccgcaacaagcacaccttcctgcagtcg
tacggggagaaggcacggcgagaggcagagctctacgggaacacccccaaggaggaccat
gtgcacagccacctctccatgtctgtcgagagtgatgggggctacatggacatgagcaag
gacgactccctggactatgtgcccatgtctgacatgaagggtgaagtcaagtatgctgac
atcgaatcctctaactatggcaccccctatgagctggacagctactccccctcagctcct
gaaaggaccgaccgggtgacactgataaatgagtctccactcctcagctacatggacttg
gtgggcttcagcttccaggtggccaatgggatggagttcctggcttccaaaaattgtgtg
caccgtgacctggctgccaggaatgtcctcatctgtgaggggaagctggtgaagatctgt
gactttggcctggcgagggacatcatgagggattccaactatatctccaaaggcagtacc
ttcttgcctcttaagtggatggctccagagagcatcttcaacaacctctacactaccctg
agtgatgtgtggtcttttgggattcttctttgggagatattcactctaggagggactcca
taccctgagctgcctatgaatgagcagttctacaacgccatcaaacgtggctatcggatg
tccaaacccacccatgcctctgatgagatctacaacatcatgcagaagtgctgggaggag
aagtttgagatcaggccatccttctcacagctggtggtgcttatgggaaacctcctggtg
gattgctacaggaagaggtaccagcaggtggatgaagagttcatgaagagtgaccacccc
gctgttgtccgcacaagacccacaattcctgtgctgaacaacacccgccttgctgccagc
tcccccaccagcaacatcctctacacagccgtgcaccagaacgggggcgagaacgattat
atcatccctcttcccgaccccaaacctgaggcaaactgtgacctccctcaggaggcctcc
atcagccgggccagctctatgctgaacgaggccaacacatcatctactatatcctgtgac
agccctctgggcctccagcaggacgaggagcaggaatctgacccacaaccaggctgccag
gagccaaccacaggacaccaagaggtggaggagagtttcctgtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (14)   
   Pfam (14)   
All databases (20)   

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