KEGG   Artibeus jamaicensis (Jamaican fruit-eating bat): 119053699
Entry
119053699         CDS       T07223                                 
Symbol
SKIC2
Name
(RefSeq) SKI2 subunit of superkiller complex protein
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
ajm  Artibeus jamaicensis (Jamaican fruit-eating bat)
Pathway
ajm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ajm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    119053699 (SKIC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ajm03019]
    119053699 (SKIC2)
Enzymes [BR:ajm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     119053699 (SKIC2)
Messenger RNA biogenesis [BR:ajm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     119053699 (SKIC2)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     119053699 (SKIC2)
SSDB
Motif
Pfam: DSHCT Ski2_N MTR4_beta-barrel DEAD MTR4-like_stalk DEXQc_Suv3 ResIII Helicase_C DUF3516 HAS-barrel
Other DBs
NCBI-GeneID: 119053699
NCBI-ProteinID: XP_037007231
Position
Unknown
AA seq 1247 aa
MMERERLVLPPPGPLDLPLRAVELGCSGRWELLNIPGAPESTLPHSLLPCAPDLQQEAEQ
LFLSSPAWLPLHGLEHSARKWQRKMDPWSLLAAPGAPVPSDLQAQRHPTTGHILGYKEVL
LENTDLSATTSLSLRRPPGPTSQFLWGNPTQYPFWPGGMDEPTITDLCTREEAEEEIDFD
TALLTVPPGFKKGVDFAPKDYPAPAPGLLSLSCLLEPLDLGGGDEDEREAMGQPGGTSRG
DTVTASSCSAPLARASSLEDLVLKEASTVASSLEPPKTLSQEQWAIPVDVTTPVGDFYRL
IPQPAFQWPFEPDVFQKQAILHLERHNSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT
SPIKALSNQKFRDFRNTFGDVGLLTGDVQLHSEASCLIMTTEILRSMLYSGSDVIRDLEW
VIFDEVHYINDAERGVVWEEVLIMLPEHVSVILLSATVPNALEFADWIGRLKRRQIYVIS
TVARPIPLEHYLFTGNSPKTQDELFLLLDSQGTFHTKGYYAAVEAKKERMSKHSQTFGAK
QPTHQGGPAQDRGVYLSLLASLRRRAQLPVVVFTFSRGRCDEQAAGLTSLDLTTSSEKSE
IHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVL
FATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC
KGRVPEMVDLHRMMTGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDS
KAHEEALAALTRKLEALEEPDLTGQLVDLPEYYIWGEELTETRRLIQQCVIESVNGLKSL
SAGRVVVVKNQKHHNALGVILQVSSNSTSRSFTTLVLCDKPMSEDPQDRGLAPSGVPYPD
DLVGFKLFLPEGPCDHTVAKLQPRDVAAITTKVLRVNGEKILEDFSKRQQLKFKQDPPAA
AVTTAVQELLRLSQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIREAQCVHSPR
FPAQYLKLRERMQVQKEMERLRFLLSDQSLLLLPEYHQRVQVLQTLGYVDEAGTVKLAGR
VACSMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDAGEQLPSTLKQGVERVR
AVAKRIGEVQVACGLNQTVEEFVGELNFGLVGVVYEWARGMPFSELAGLSGTPEGLVVRC
IQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq 3744 nt   +upstreamnt  +downstreamnt
atgatggagagggagcgactagtgctacctcccccaggtcccttggacctgcctcttcgg
gctgtggagctgggatgcagtgggcgctgggagctgctcaatatacctggggctccagag
agcacccttccccacagcctccttccctgtgccccagatctgcagcaagaagcagagcaa
ttgtttctgtcatctccagcctggctgcctctgcatggcctggaacactcagctcgaaaa
tggcagaggaagatggatccctggtctctccttgctgcaccgggggccccagtcccctct
gacctacaagcccaaagacacccaaccacaggccacatactgggctacaaggaggtcttg
ctggagaatacagacctgtcggccactacctcattatctcttcgccggccgccagggccc
acctcccagttcctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccaccataacagatctgtgcactcgggaggaagctgaagaggagatagattttgac
acagctcttcttactgttccacctggcttcaagaaaggtgtggactttgcaccaaaggat
tacccagctccagctcctgggttgctcagcctcagctgtctgttagagcccctggatctg
ggtggcggtgatgaagatgagagggaggcaatgggacagccaggaggtaccagcagaggg
gacactgttacggcctcttcctgtagtgctcccttggcccgagcaagcagcttggaggac
ctagtgttgaaggaagcctccacagttgcatcctccctagagccccccaaaaccctttct
caggagcagtgggccattcctgtggacgtcaccacccctgttggtgatttctaccgcctc
atcccccagccagccttccagtggccatttgagcctgatgtattccagaaacaggccatc
ctgcacttggaacggcacaactcggtctttgtggcagctcacacatccgcagggaagaca
gttgtggctgaatatgccattgcccttgcccagaaacacatgacacgcaccatctacact
tcgcctatcaaggctctgagtaaccagaagttccgagacttccgaaacacatttggggac
gtggggctgctcacgggggatgtacagctgcactcagaggcctcttgcctcatcatgacg
acagagatccttcgctccatgctgtacagtggctcagatgtcatccgggacctggagtgg
gtcatctttgacgaggttcactatatcaacgatgctgagcgtggggtcgtgtgggaggag
gtgcttatcatgctccctgaacatgtctctgtcatccttctgagtgccactgttcccaat
gcccttgaatttgctgactggattggacgactgaagcgtcgtcagatctacgtcatcagc
accgtcgcccgccccatccccctagagcattatctctttacggggaacagtcccaagact
caggatgaactcttcctgttgctggactcccaaggcaccttccatacaaaggggtactat
gcagctgtggaggccaagaaggagaggatgagcaaacactcccagacctttggggccaag
cagcccacgcatcagggtggcccagcacaggaccgaggtgtgtacctgtccctcctcgct
tccctccgccgccgtgcacagctgcctgtggtggtgttcaccttctcccggggccgctgt
gacgagcaggctgcgggcctcacctcccttgacctcaccacaagctcagagaagagcgag
attcacctcttcctgcagcgctgccttgctcgcctccgtggctctgaccgccagctgccc
caggtcctgcacatgtcagagctcctgcaccgaggcctgggcgtgcaccacagcggcatc
ctgcccatcctcaaggagatcgtggagatgcttttcagccgtggcctggtcaaggtcctg
tttgccactgagacctttgccatgggtgtaaatatgccggcccgaacggtggtgtttgac
tccatgcgcaagcacgacggctctacctttcgggacctgctcccgggcgagtatgtgcag
atggcgggtagggcaggccggaggggcctggaccctacaggcaccgttatcctgctctgc
aagggtcgagtgcctgagatggtggacctgcaccgaatgatgacgggtaagccgtcgcag
ctgcagtcgcagttccgcctcacatacaccatgatcctcaacctgctgcgggtggacgcc
ctccgggtggaagacatgatgaagaggagtttctctgagtttccgtcccgcaaggacagc
aaggcccatgaagaggctctagctgcactaaccaggaaactggaggccttagaggaacct
gacctgactggccaactggtcgacctgcccgagtattacatctggggagaggaattaaca
gagacccggagactgatccagcaatgtgtcatagagtctgtgaatgggctgaaatctctc
tcagccggaagggtggtggttgtgaagaatcagaagcatcacaacgcactgggtgtgatc
ctgcaggtctcctcaaactctaccagcagatcattcacaaccctggtcttgtgtgataag
cccatgtctgaggacccacaggacagggggttggccccctcaggtgtgccctatccagat
gaccttgtgggattcaagctgttcctgcctgaagggccctgtgaccacactgtggccaag
cttcagcccagagacgtggctgccatcaccaccaaagtgctccgggtgaatggagagaag
atcttggaggacttcagcaagaggcagcaactgaagtttaagcaggatcctcctgctgcc
gctgtgaccactgctgtccaggaactgctacgtctgtctcaggcccacccagcaggaccc
cctacccttgaccctgtcaacgacttgcagcttaaagatatgtcggtggttgagggcggg
ctccgtgcccggaagctggaggagctgatccgggaggctcagtgtgtgcacagcccccgt
ttccccgcccagtacctgaagctgcgggagcgaatgcaggtacagaaggagatggagcgg
ctgcgcttcctgctgtcagaccagtcactgctactgctccccgagtaccaccagcgagta
caggtgctccaaaccctgggttacgtagacgaggcaggcacggtgaagctggcggggcgg
gtggcttgttccatgagcagccacgagctgctcctcactgagctcatgtttgacaacgct
ctgagtgccctgcggccagaggagattgcagccctgctgtctggcctggtctgccagagc
cctggggacgctggggagcagctcccaagtaccctcaaacagggagtggaacgtgtccgg
gctgtggccaagcggattggtgaggttcaggtggcctgtggcctgaaccagacagtggag
gaatttgtaggggagctgaattttgggcttgttggagttgtgtacgagtgggcccggggc
atgcccttctctgagttggcagggctctcggggacccctgagggcctggtggtccgctgc
atccaacgcctggccgagatgtgtcggtcactgcggggagcagcccgtctggtaggcgag
cctgtgttaggtgccaagatggagacggcagccaccctgctacggagggacatcgtcttc
gcagccagcctctatactcagtga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (14)   

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