KEGG   Acidovorax sp. JS42: Ajs_3089
Entry
Ajs_3089          CDS       T00455                                 

Definition
(GenBank) Oxidoreductase FAD-binding domain protein
  KO
K14581  naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7]
Organism
ajs  Acidovorax sp. JS42
Pathway
ajs00624  Polycyclic aromatic hydrocarbon degradation
ajs00626  Naphthalene degradation
ajs00627  Aminobenzoate degradation
ajs00633  Nitrotoluene degradation
ajs00642  Ethylbenzene degradation
ajs01100  Metabolic pathways
ajs01120  Microbial metabolism in diverse environments
ajs01220  Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:ajs00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    Ajs_3089
   00633 Nitrotoluene degradation
    Ajs_3089
   00642 Ethylbenzene degradation
    Ajs_3089
   00626 Naphthalene degradation
    Ajs_3089
   00624 Polycyclic aromatic hydrocarbon degradation
    Ajs_3089
Enzymes [BR:ajs01000]
 1. Oxidoreductases
  1.18  Acting on iron-sulfur proteins as donors
   1.18.1  With NAD+ or NADP+ as acceptor
    1.18.1.7  ferredoxin---NAD(P)+ reductase (naphthalene dioxygenase ferredoxin-specific)
     Ajs_3089
SSDB
Motif
Pfam: NAD_binding_1 Fer2 FAD_binding_6 FAD_binding_8 Glyco_tranf_2_3
Other DBs
NCBI-ProteinID: ABM43218
UniProt: A1WAE3
Position
3260037..3261023
AA seq 328 aa
MELVVEPLNLHLNAETGSTLLDVLRSNEVPISYSCMSGRCGTCRCRVIAGHLRDNGSETG
RPQAGKGAYVLACQAVLTEDCTIEIPESDEIVVHPARIVKGTVTAIDEATHDIRRLRIKL
AKPLEFSPGQYATVQFTPECVRPYSMAGLPSDAEMEFQIRAVPGGHVSNYVFNELSVGAS
VRISGPLGTAYLRRTHTGPMLCVGGGTGLAPVLSIVRGALESGMSNPIHLYFGVRSEQDI
YDEERLHALAARFPNLKVNVVVATGPAGPGHRSGLVTDLIGRDLPNLAGWRAYLCGAPAM
VEALNLLVARLGIVPGHIHADAFYPSGV
NT seq 987 nt   +upstreamnt  +downstreamnt
atggaactggtagtagaacccctcaatttgcatctgaacgcggagaccggcagcaccctg
cttgacgtgctcaggtccaacgaggtccccatttcttatagctgcatgtcgggccgctgc
ggcacttgccgttgccgtgtgattgccggccatcttcgcgataacggctccgagacaggg
cgcccgcaggcaggaaagggggcctatgtcctggcctgtcaggcggttctgaccgaagac
tgcacgatcgagattcctgaatctgacgagatcgtggttcacccggcgcgcatcgtcaag
gggacggtcacagcgatagacgaagccacccatgacatccggcgcctgcgcatcaaactg
gccaaaccgcttgagttcagccctggccagtacgcaacggtgcagttcacgcccgaatgc
gtccgcccctattcgatggccgggctgcctagcgatgcggaaatggagtttcagattcgc
gcggttccgggcgggcatgtcagcaactacgttttcaatgaactgtccgtaggcgcttcg
gtgcggatcagcggccccctcggaacggcctatctgcggcgcacgcacaccggccccatg
ctttgtgtggggggtggaacaggtctggcgcccgtcctttcgatcgttcgaggcgcactg
gaaagcgggatgagcaaccccatccatctgtacttcggtgtgcggagcgagcaggacatc
tatgacgaggaacgccttcacgcattggctgcaaggtttccgaatctcaaggtgaatgtc
gttgttgcaacaggccctgccggccctggtcatcgatccggcctggtcaccgatctgatc
ggccgtgacttgcccaatttggcgggatggcgcgcctacctgtgtggcgctccggccatg
gtcgaggccctgaacctgctcgttgctcgcctaggcatagtacccgggcacatccatgcc
gatgcgttctatcccagcggcgtctga

KEGG   Acidovorax sp. JS42: Ajs_3091
Entry
Ajs_3091          CDS       T00455                                 

Definition
(GenBank) Rieske (2Fe-2S) domain protein
  KO
K14578  naphthalene 1,2-dioxygenase ferredoxin component
Organism
ajs  Acidovorax sp. JS42
Pathway
ajs00624  Polycyclic aromatic hydrocarbon degradation
ajs00626  Naphthalene degradation
ajs00627  Aminobenzoate degradation
ajs00633  Nitrotoluene degradation
ajs00642  Ethylbenzene degradation
ajs01100  Metabolic pathways
ajs01120  Microbial metabolism in diverse environments
ajs01220  Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:ajs00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    Ajs_3091
   00633 Nitrotoluene degradation
    Ajs_3091
   00642 Ethylbenzene degradation
    Ajs_3091
   00626 Naphthalene degradation
    Ajs_3091
   00624 Polycyclic aromatic hydrocarbon degradation
    Ajs_3091
SSDB
Motif
Pfam: Rieske Rieske_2
Other DBs
NCBI-ProteinID: ABM43220
UniProt: A1WAE5
Position
3261670..3261984
AA seq 104 aa
MSENWIDAIARDAVPEGDVVGVIVAGKDIAFYEVEGEVFATDNLCTHGAARLSDGFLEGR
EIECPLHQGRFDVCTGKALCTPLTQDIKTYPVKIENMRVMLKLD
NT seq 315 nt   +upstreamnt  +downstreamnt
atgtccgagaactggattgatgccatcgcacgggacgctgtgcctgagggcgatgtggtc
ggagtcatcgtggcaggcaaagacattgccttctatgaggtggaaggtgaggtcttcgcc
accgacaacttgtgtacccacggggctgcgcgcttgagcgacggctttctcgaaggccgg
gaaattgaatgtcctttgcatcaaggccgattcgatgtttgcacgggtaaagccttgtgc
acacccctgacacaggacatcaaaacctaccccgtaaaaatcgaaaacatgcgcgtgatg
ctcaagctggactaa

KEGG   Acidovorax sp. JS42: Ajs_3092
Entry
Ajs_3092          CDS       T00455                                 

Definition
(GenBank) phenylpropionate dioxygenase alpha subunit
  KO
K14579  naphthalene 1,2-dioxygenase subunit alpha [EC:1.14.12.12 1.14.12.23 1.14.12.24]
Organism
ajs  Acidovorax sp. JS42
Pathway
ajs00624  Polycyclic aromatic hydrocarbon degradation
ajs00626  Naphthalene degradation
ajs00627  Aminobenzoate degradation
ajs00633  Nitrotoluene degradation
ajs00642  Ethylbenzene degradation
ajs01100  Metabolic pathways
ajs01120  Microbial metabolism in diverse environments
ajs01220  Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:ajs00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    Ajs_3092
   00633 Nitrotoluene degradation
    Ajs_3092
   00642 Ethylbenzene degradation
    Ajs_3092
   00626 Naphthalene degradation
    Ajs_3092
   00624 Polycyclic aromatic hydrocarbon degradation
    Ajs_3092
Enzymes [BR:ajs01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.12  With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into the other donor
    1.14.12.12  naphthalene 1,2-dioxygenase
     Ajs_3092
    1.14.12.23  nitroarene dioxygenase
     Ajs_3092
    1.14.12.24  2,4-dinitrotoluene dioxygenase
     Ajs_3092
SSDB
Motif
Pfam: Ring_hydroxyl_A Rieske
Other DBs
NCBI-ProteinID: ABM43221
UniProt: A1WAE6
Position
3262073..3263416
AA seq 447 aa
MSYQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVTAKMGVD
EVIVSRQNDGSVRAFLNVCRHRGKTLVHTEAGNAKGFVCGYHGWGYGSNGELQSVPFEKE
LYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKHSGGLEL
VGPPGKVVVKANWKPFAENFVGDIYHVGWTHAAALRAGQSVFSSLAGNAKLPPEGAGLQM
TSKYGSGMGLTWDYYSGNFSADMVPDLMAFGAAKQEKLAKEIGDVRARIYRSILNGTVFP
NNSFLTGSATFKVWNPIDENTTEVWTYAFVEKDMPEDLKRRLADAAQRSIGPAGFWESDD
NENMETLSQNAKKYQSSNSDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQA
HISSSNWAEFENASRNWHTELTKTTDR
NT seq 1344 nt   +upstreamnt  +downstreamnt
atgagttaccaaaacttagtgagtgaagcagggctgacgcaaaagctcctgattcatggc
gacaaagaacttttccagcacgaattgaagaccatcttcgcgcggaactggctttttctg
acccatgacagtctgattccctcccccggcgactatgtcacagccaaaatgggcgtcgat
gaagtcatcgtctcccgccagaacgatggctcggtgcgagcctttttgaatgtttgccgt
caccggggcaagacactagttcacactgaagccggaaatgcgaaaggctttgtgtgcggc
taccacggctggggctacggttccaacggcgaactgcaaagcgttccctttgaaaaagag
ttgtacggagatgcgatcaaaaagaaatgcctgggcttgaaagaagtcccccgcatcgaa
agctttcatggctttatctatggctgttttgatgcagaagctcccccgctcatcgattat
ctgggtgatgcagcctggtacctggaacccaccttcaagcactctggtggcctggaactt
gtaggcccccccggcaaagtggtggttaaggccaactggaagccttttgcggaaaacttt
gtaggtgacatctaccacgttggttggacgcacgcagcggctttgcgcgcagggcagtcg
gtatttagttctcttgcgggcaacgctaagcttccacccgaaggcgcgggcttgcaaatg
accagcaagtatggcagtggaatgggcttaacgtgggactactactccggtaacttcagc
gctgatatggttcccgatctgatggcattcggcgccgcaaaacaggaaaaactcgccaag
gaaatcggcgatgtccgggcacggatttaccgcagcattctgaacggcacggttttcccg
aacaacagctttttgaccggctccgctaccttcaaggtctggaacccgatcgatgaaaac
acgaccgaggtttggacgtatgccttcgtagaaaaagacatgcctgaggacttaaagcgt
cgcttggctgacgcggctcagcgcagtatcggaccagcaggattctgggaaagcgacgac
aacgaaaacatggagacgttgtcgcaaaatgccaagaaataccaatccagcaacagtgat
cagattgccagtttgggtttcggcaaggacgtctacggcgacgaatgctatccgggcgtc
gttggcaaatcggcaatcggcgaaaccagctatcgcggattctaccgtgcctaccaggct
cacatcagcagctccaattgggccgagttcgaaaatgcctcccgaaattggcacaccgaa
ctcaccaagacaactgatcgctaa

KEGG   Acidovorax sp. JS42: Ajs_3093
Entry
Ajs_3093          CDS       T00455                                 

Definition
(GenBank) aromatic-ring-hydroxylating dioxygenase, beta subunit
  KO
K14580  naphthalene 1,2-dioxygenase subunit beta [EC:1.14.12.12 1.14.12.23 1.14.12.24]
Organism
ajs  Acidovorax sp. JS42
Pathway
ajs00624  Polycyclic aromatic hydrocarbon degradation
ajs00626  Naphthalene degradation
ajs00627  Aminobenzoate degradation
ajs00633  Nitrotoluene degradation
ajs00642  Ethylbenzene degradation
ajs01100  Metabolic pathways
ajs01120  Microbial metabolism in diverse environments
ajs01220  Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:ajs00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    Ajs_3093
   00633 Nitrotoluene degradation
    Ajs_3093
   00642 Ethylbenzene degradation
    Ajs_3093
   00626 Naphthalene degradation
    Ajs_3093
   00624 Polycyclic aromatic hydrocarbon degradation
    Ajs_3093
Enzymes [BR:ajs01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.12  With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into the other donor
    1.14.12.12  naphthalene 1,2-dioxygenase
     Ajs_3093
    1.14.12.23  nitroarene dioxygenase
     Ajs_3093
    1.14.12.24  2,4-dinitrotoluene dioxygenase
     Ajs_3093
SSDB
Motif
Pfam: Ring_hydroxyl_B
Other DBs
NCBI-ProteinID: ABM43222
UniProt: A1WAE7
Position
3263431..3264015
AA seq 194 aa
MMINTQEDKLVSAHDAEEFHRFFIVQDDALLQEVNTLLTREAHLLDIQAYKAWLEHCVAP
EIKYQVISRELRSTSERRYQLNDAVNLYNENYQQLKVRVEHQMDPQNWANNPKIRFTRFV
TNVTAAKDKSAPEMLHVRSNLILHRARRENQVDVFYATREDKWKRIEGGGIKLVERFVDY
PERIPQTHNLLVFL
NT seq 585 nt   +upstreamnt  +downstreamnt
atgatgatcaatacccaggaagacaagctggtctccgcgcacgacgccgaagaatttcac
cgtttcttcatcgtacaagatgatgcactactgcaagaagtcaacacgctcctgacccgc
gaagcgcacctgctggacattcaggcctacaaagcctggcttgaacactgcgttgccccc
gagatcaaataccaagtgatctcgcgagaacttcgctccacttccgagcgtcgataccaa
ctgaatgatgcggtgaatctctacaacgagaactatcaacagctgaaagttcgagttgaa
caccagatggatcctcagaactgggccaacaacccgaagatccgcttcacccgcttcgtc
accaatgtcacggcggccaaggacaagagcgcaccggaaatgctgcatgtgcggtccaac
ctcattctccatcgcgccagacgagaaaaccaagttgacgtcttctatgcaacgcgtgaa
gacaaatggaaacgcatcgaaggtggtggtatcaaattggtcgaacgctttgtggactac
ccggagcgcattccccagacccacaacctgttggtcttcctgtga

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