KEGG   Alkalimarinus alittae: NKI27_05090
Entry
NKI27_05090       CDS       T08567                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
alkm  Alkalimarinus alittae
Brite
KEGG Orthology (KO) [BR:alkm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:alkm03009]
    NKI27_05090 (rlmD)
Enzymes [BR:alkm01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     NKI27_05090 (rlmD)
Ribosome biogenesis [BR:alkm03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    NKI27_05090 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 TRAM RrnaAD PCMT Cons_hypoth95 MTS TRM5-TYW2_MTfase Methyltrans_SAM Methyltransf_11 Methyltransf_15 DOT1 Methyltr_RsmB-F Methyltransf_12 Methyltransf_23 Ubie_methyltran
Other DBs
NCBI-ProteinID: UZE97126
Position
1148802..1150139
AA seq 445 aa
MARRPQHKKKKLPAGLVELTINALTHDGRGVARREGKTQFVEGALVGETVRARYTDTRSK
FDELVAEEILVASEDRLTPPCPHASLCGGCSLQYIDSEAQIRFKQTVLQGQFRHFGDITV
ESFLPPMTGPSSGYRRKARLGVRYVGKCDEMLLGFREKRSSSITNINQCLVMDDRIAKHI
DALRAVIRSLSVFRAITHVEVAAGDAEVALVFRHMSPLNNEDIDKLIAFGDSHYFHIYLQ
PQDAGSTYRIHPKTGEERLTYRLDDFDLNMKFHPLDFTQVNADINHQMVSRAVDWLQVNS
EDRVLDLFCGLGNFTLPLARKAREVVGVEGTEAMVLRGRENAEYNDLRNVKFYGADLQAD
FTQSEWAKEGFDKLLIDPPRSGALDMVRYLPKFGAKKIVYVSCNPATLSRDAGVLVEHGY
RMVKAGVMDMFPHTTHVESIALFEK
NT seq 1338 nt   +upstreamnt  +downstreamnt
atggcaagaagacctcagcataaaaagaaaaaactacccgcagggttggttgagctaacc
attaatgcgttaactcatgatggtcgaggcgttgctcgtcgagagggtaaaacccaattt
gtagaaggcgcgctcgtgggtgaaacggtgcgagcccgttataccgatacgcgtagtaaa
tttgatgaattggtcgctgaagagatcttggttgcttcagaagaccgtctcacaccgcct
tgcccccatgcctcactctgcgggggctgcagtttgcaatatatcgacagtgaagcccag
atacgctttaagcagactgtattacaggggcagtttcgtcattttggcgacataacagtt
gaatcgttccttccccctatgacgggcccttcgtcaggctatcgccgtaaggcacggcta
ggggttcgctatgtgggtaagtgtgacgaaatgctattggggtttcgtgaaaagcgtagc
agttctattaccaatattaaccagtgcttagtgatggatgatcgtatcgctaagcatatt
gatgcgttacgtgcggttattcgtagcctgagtgtatttcgagctattacgcatgtagaa
gtggcggctggggatgcagaggttgcacttgtttttcgtcatatgtcgcctttaaataat
gaggatatcgataagcttattgcgtttggtgattcgcattattttcatatttatttgcag
cctcaagatgcgggttcgacgtaccgaattcatcctaagaccggcgaagagcgtttaact
tatcgattggatgattttgatttaaacatgaagttccatccgctagattttacacaggtc
aatgctgatattaatcatcagatggtgagccgtgcggttgactggttgcaagtgaactca
gaagatagagtactcgacctgttttgcgggttaggcaactttacattacctctcgctcga
aaggcacgagaggtagtcggtgtagaaggcactgaggcgatggtgttacggggtcgagaa
aatgccgaatataatgacttgcgcaacgtgaaattttatggcgcagacttgcaagccgat
tttactcagtcagaatgggctaaagaaggttttgataaactattaattgatccacctcgc
tcaggcgcgttagatatggttcgatatttgcctaagtttggtgcgaagaaaattgtttat
gtttcgtgcaaccctgcaacattatcgcgggatgcgggtgtattggttgaacatggttac
cgtatggttaaggcgggcgttatggacatgtttccgcacactacacatgttgagtcaatt
gcactgtttgaaaaataa

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (17)   
   Pfam (17)   
All databases (18)   

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