KEGG T02721: I876

Alteromonas mediterranea U7: I876_17205

Entry

I876_17205        CDS       T02721

Name

(GenBank) DNA-directed RNA polymerase subunit alpha

K03040

DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]

Organism

amae Alteromonas mediterranea U7

Pathway

amae03020

RNA polymerase

Brite

KEGG Orthology (KO) [BR:amae00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    I876_17205
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amae03021]
    I876_17205
   03400 DNA repair and recombination proteins [BR:amae03400]
    I876_17205
Enzymes [BR:amae01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     I876_17205
Transcription machinery [BR:amae03021]
Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     I876_17205
DNA repair and recombination proteins [BR:amae03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      I876_17205

SSDB

Motif

Pfam:

RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD

Other DBs

NCBI-ProteinID:

AGP91273

Position

complement(3921919..3922905)

AA seq 328 aa
MGSVTEFLKPRLVEIENVSPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI
DGVLHEYSTKEGVQEDVIEILLNLKGLAVRLEGKTEATLTLVKSGAGPVVAGDIQHDGDV
EIANPEHVICTLTGEAEISMRIKVEMGRGYVPASTRRSSEEDDRPIGRLLVDASYSPVER
IAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRSATILAEQLDAFVDLRDVSEPEA
KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRTEVELLKTPNLGKKSLTE
IKDVLASRGLSLGMRLENWPPESIAEKD

NT seq 987 nt +upstreamnt +downstreamnt
gtgggttctgtgactgaattcctaaaaccgagattagttgagatcgaaaacgtttctcct
actcgtgccaaagtaactttggaaccactagagcgcggctttggccatactctaggtaac
gccctacgtcgtattttactgtcatctatgccaggatgtgcagttaccgaggtagaaatt
gatggcgttcttcacgagtacagcaccaaagaaggtgtacaagaagacgttatcgaaatc
ttgctaaatcttaaaggtttagcggttcgccttgaaggtaaaactgaggcaaccctaact
ctagtgaaatctggcgctggccctgttgttgctggtgatattcagcatgatggcgacgta
gaaattgcaaaccctgagcatgttatttgtactctgactggcgaagctgaaatcagcatg
cgcatcaaagtagaaatgggccgtggttatgtaccagcttctacccgtcgctcctctgaa
gaagatgatcgtccaattggtcgtttgttagtagacgcttcatacagcccagttgaacgt
attgcttacagtgtagagtctgcacgtgttgaacaacgcacagacctagacaaactaatc
atcgacatggagacgaacggtactttggatcctgaagaagcgatccgccgttctgctact
atcctagctgaacagctagatgcattcgtagacctacgtgatgtatctgagccagaagcg
aaagaagagaagccagaattcgatccgattctgcttcgcccagtagatgacctagagcta
acagtacgttctgcaaactgtttgaaagcagaagctatccagtacattggtgacctggta
cagcgcactgaggttgagctacttaaaacgccaaaccttggtaagaaatcgctaactgaa
atcaaagatgttctagcatctcgtggtctttctctaggtatgcgcctagaaaactggccg
ccagagagcatcgctgaaaaagattaa

All links

Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (5)   

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