KEGG   Aquimarina sp. TRL1: HN014_18960
Entry
HN014_18960       CDS       T10158                                 
Name
(GenBank) RecQ family ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
aqr  Aquimarina sp. TRL1
Pathway
aqr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aqr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HN014_18960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aqr03019]
    HN014_18960
   03400 DNA repair and recombination proteins [BR:aqr03400]
    HN014_18960
Enzymes [BR:aqr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HN014_18960
Messenger RNA biogenesis [BR:aqr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     HN014_18960
DNA repair and recombination proteins [BR:aqr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      HN014_18960
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind DnaD_N HTH_24 HTH_11 TrmB HTH_27 WHD_MCM8 HTH_5
Other DBs
NCBI-ProteinID: QKX06910
UniProt: A0A7H8PQP4
Position
4606017..4607909
AA seq 630 aa
MSTSLKILQEFWEYDRFRPLQEAIITAVLEGNDTFALMPTGGGKSICFQVPAMQKEGICI
VISPLIALMQDQVAQLRKKGIKALALPSGIKYEELDTALDNCIYGNYKFLYLSPERLQQD
IVQERIKLMNVNLIAIDEAHCISQWGHDFRPAYLKIKLLRILHPTTPIIALTASATPSVR
TDIIKELDLFDPKVFKKSFFRENLSYLVYNSLDKKYSVEKILRKHPGPSIIYLRNRKAVK
EFSDHLNQAGLLSTYYHGGIETAEKNKRFAQWMQEEIPIMVATNAFGMGIDKANVRTVIH
CHLPESIESYFQEAGRAGRDQKKAYAYLLKSDHDIARVKDQFINVLPDISFVKHVYRKLC
NYFQVSYGEGEQTKHNFYYTNFCKTYQLNPLLVFNTLQSLDRCGILRFTQHYSKKTAIHI
TVTGNQLLSYLHTNAEHALITKAILRTYTGVFEGEVPINISHIASRTHKTEQEVVHTLQH
LEKAALIHFSYNETDAEIIFLVPREDDRTINRVSSYISEQTAAKIKKVQSIIQYIQNDSI
CRSQQLLAYFGEDDSQHCGICSNCLAKHTISKNTKEIKEQILFLLQEKERSSRELTDQLG
IETSEILNCIQELVSEGVLIINSNNKYQLA
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgagtacttccttaaaaatattgcaagagttttgggaatacgaccgcttcagaccgtta
caagaagctattattacagctgttttagaagggaatgacacatttgcgctcatgcctaca
gggggaggaaaatctatttgctttcaggtacctgctatgcaaaaagagggaatctgtatt
gtcatttcaccactgattgctttaatgcaggatcaggtagctcagttgcgtaaaaaaggc
attaaagccctggcacttcccagtgggataaaatacgaggaactggacaccgcactggac
aattgcatctatgggaattataaattcctatacctttctccggagagattacagcaagat
attgtccaggaacgtatcaaactcatgaatgtcaacctgattgcgattgacgaggcacat
tgtatctctcaatggggacatgatttcagacctgcttacttaaaaattaagcttctcaga
atattacaccctaccactccaattatagcactgactgcatccgcaactccttctgtacgt
actgatattattaaagaactggatttgttcgatcccaaagtttttaaaaaatcctttttt
agagaaaacctgtcctatttagtatacaattcactggataagaaatattctgtagaaaaa
atattacggaaacatccaggtccttctattatttatttgagaaacagaaaagctgtaaaa
gaattttctgatcacctcaatcaggcagggcttctaagtacatattatcacggagggatt
gaaactgccgaaaaaaacaaacgctttgcccaatggatgcaggaagaaatcccgataatg
gttgccaccaatgcatttggaatgggaattgacaaagccaatgtccgaaccgttattcac
tgtcatcttccggaaagtatcgaaagttattttcaggaagccggaagagctggaagagat
caaaaaaaagcatatgcatatttgctaaaaagtgaccatgacatcgcacgggtcaaagat
caatttatcaatgtattgcctgatatcagctttgtaaaacatgtatacagaaaactctgt
aattattttcaggtttcctatggagaaggagaacagacaaaacataatttctattatact
aacttttgcaaaacctatcaattaaacccgctactagtctttaataccctgcaatcactc
gatcgatgtggaattcttcggtttacgcagcactactccaagaaaacagcaatccacatt
actgttaccgggaatcagttattaagttacctacacacaaatgctgaacatgcacttatc
accaaggcaattctaagaacctataccggtgtttttgaaggagaagtacccatcaatatt
tcgcatattgcatctcgtacccataaaacagaacaagaggtagtacacactttacaacat
ttggaaaaagcagcgcttattcattttagctataatgagaccgatgccgaaatcattttt
ttagttcccagagaagatgaccgtaccatcaacagagtcagctcctacatctccgaacaa
acagctgccaaaattaaaaaagtacaatccatcattcaatatattcagaatgattctatt
tgcagaagtcagcaactattagcttactttggagaagacgactcccaacactgtggtata
tgtagcaactgtctagccaaacacacaatttccaaaaacacgaaagaaattaaggaacaa
atcctatttttacttcaggaaaaagaacgctcttcccgggaactgaccgatcaattagga
atcgaaacttcggaaatcctgaattgtattcaggaactggtttcagaaggggtacttatt
atcaattctaacaacaaatatcaattagcataa

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (12)   

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