KEGG T09445: EKO05

Ascochyta rabiei: EKO05_0004416

Entry

EKO05_0004416     CDS       T09445

Name

(RefSeq) pre-mRNA-splicing factor cwc22

K13100

pre-mRNA-splicing factor CWC22

Organism

arab Ascochyta rabiei

Brite

KEGG Orthology (KO) [BR:arab00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:arab03041]
    EKO05_0004416
Spliceosome [BR:arab03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    EKO05_0004416
Complex C
   U4/U6.U5 tri-SnRNP related factors
    EKO05_0004416

SSDB

Motif

Pfam:

MA3 MIF4G Herpes_BBRF1 rva_4 Cnd1 HEAT_ULK4

Other DBs

NCBI-GeneID:

62213187

NCBI-ProteinID:

XP_038800214

Position

6:1526289..1528760

AA seq 823 aa
MLASAVRIPSPEPDVAEQDAPRKRDRSPYDAGPSKRSRRHDADDTNGDDKDAPPRRERGN
GRPRDHNGSRDVQVGDDDARLNLFKSAFSASRKLPIDDSKTRAGGAYIPPARLREMQKDI
TDKATPEFQRMAWEALKKSIQGLINKTNTANIKMIVPELFSENLIRGRGLFCRAIMKAQA
ASLPFTPIYGAMVAIVNTKLPQVGDLLVRRLIVQFRKSFRRNDKAVCLASTMFLSHLVNT
QVVHEVLIAEILLLLLNKPSDDSVEIAVGIMKEVGAFLEEMNSVIANAIFDQMRNILHEA
DIDKRTQYMIEVLFEVRRTKYKDHAAVKEDLDLVEEEDQITHRHTLEDDVKVEDGLNIFK
FDAEYEAHEAEYQKIKAEILGEEEGSDAEYTDASDSDDEDEEQKAEDVKDQTNADLVSLR
RTIYLTIKSSGGFEECCHKLMRINLPHGLENELTTMIVECASQERTYEKFYGMIGERFCK
INRMWTDLFEEGFAHYYETIHRFETNRLRIIAQFFAHLLATDAIGWHVFQVVKLNEEDTT
SSSRIFIKILFEELLSFLGQKDVVARFKDPILQDSLTGVFPTDADDQAKTRFSINFFTAI
GMGVLTEGMREWLKNAAPKPKPLPEPESDSEDSRSVSSYSSYSSRSDSRSRSRSRSRSHT
PARRRRDSRSSSRGRSYTRSPTPDRKRVTAGKARTRSLSDSRSRSRSPAPRKKRNYSSSR
SPSRSRSPPPKRRGRSPSNSPSRSPPPKKKARSPSVSVSRSRSPVRRRRSYSSSRSRSPP
PKKTNGKGKARASESRSRSPVRRRRSYSSSRSRSPLPRKGRDS

NT seq 2472 nt +upstreamnt +downstreamnt
atgctcgcctccgccgtccgcattccctcgcccgagccggacgtcgcggagcaggacgcc
ccccgcaagcgcgaccgctcgccctacgacgccggcccttcgaagcgctcgcggcgccac
gacgccgacgacaccaacggcgacgacaaagatgcgccgccgcgccgcgagagggggaac
ggccgtccgcgcgaccacaacggcagcagagacgtccaggtcggcgacgacgatgcgcgc
ctcaacctcttcaagagcgcctttagcgcctcgcgcaagctgcccatcgacgactccaag
acgcgcgccggcggtgcctacatcccgcccgcgcgcctgcgcgaaatgcagaaggacatc
accgacaaggcgacgcccgagttccagcgcatggcctgggaggccctgaagaagtcgatc
cagggcctgatcaacaagaccaacacggccaacatcaagatgattgtccccgagctgttc
agcgagaatctgattcgcgggcgaggcctcttttgtcgcgccatcatgaaggcccaggct
gctagtttgccgttcacgcccatctacggtgccatggtcgctatcgtcaacacaaagctg
ccgcaggtgggagatctgctggttaggcgcttgattgtgcagttcaggaagagcttcagg
agaaacgacaaggccgtgtgcttggccagtaccatgttcctcagccacctggtcaacacg
caggtcgtgcacgaggtgctgattgccgagattctgctgctgctgctcaacaagccgtcg
gacgactcggtggagattgccgtgggcatcatgaaagaggtgggcgctttcctcgaggag
atgaactcggtgatcgcgaatgcaattttcgaccagatgaggaatattctgcacgaggcc
gatatcgacaagcgcacccagtacatgattgaggtcttgtttgaggtcagacggaccaag
tacaaggatcatgccgcggtcaaggaggatttggatcttgtggaagaggaggaccagatc
acacataggcacacactcgaggacgatgtcaaggtcgaggacggtctcaacatcttcaag
ttcgatgcagagtacgaagcgcacgaggctgagtaccagaagatcaaggccgagatcctg
ggcgaagaggagggcagcgatgccgaatacacagacgcttctgactcggacgacgaggac
gaagagcaaaaggccgaagacgtcaaggaccaaaccaatgccgacctcgtcagccttcgc
cgaaccatctacctcaccatcaagtctagcggtggtttcgaggaatgttgtcacaagctc
atgcgcatcaacctcccgcacggcctcgagaacgaactcacgaccatgatcgtcgagtgc
gccagccaggagcgtacctatgaaaagttctacggcatgatcggtgaacgcttttgcaag
atcaatcgcatgtggaccgatctgtttgaggaaggcttcgcacactactacgaaaccatt
caccgcttcgagacaaatcgcctgcgcatcattgcccaatttttcgcacacctccttgcc
acagatgcgatcgggtggcatgtgttccaggttgtcaagctcaacgaggaggacacaacg
tcttcttctcgtatctttatcaaaattctcttcgaagaactactctccttccttggtcaa
aaagacgtcgttgcgcgtttcaaggaccccatactgcaagacagcctcactggtgtcttc
cccacagacgcagacgatcaggccaagacgcgcttctcgatcaacttcttcaccgctatc
ggtatgggtgtgcttaccgagggtatgcgcgagtggctcaagaatgccgcgccgaaacca
aagccgcttcccgagccagagagcgactccgaggactcgaggagcgtgtcaagttattcc
tcgtactcgtcacgcagcgattcacgcagcaggagtaggagcaggagtagaagtcacacc
ccagcccgcagacgccgcgattcgagatcttcttcgaggggccggtcgtacacgcgcagc
ccgacaccagaccgcaaacgcgtcacagctggtaaagcacgcacccgctccctctcagac
tcacgctctcgttcccgctcccctgctccgcgcaagaagcgcaactattcctccagccgc
tcgccttcgcgctctcgctcgccacctcccaagcgccgtggtcgtagcccttcaaactcg
ccctcgaggagtccgccaccaaagaagaaggccaggagtcccagtgtgagcgtgagcagg
agcaggagtccagtgcgaaggcgacggagctacagttcaagcagatcaagaagcccacca
cccaagaagaccaacgggaaaggcaaggcgagggcgagtgagagtcggagtcgtagccct
gtacggcggagacggagctacagcagctcgaggtctagatctcctctgccccgaaaaggg
agggattcctag

All links

Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (10)   

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