KEGG   Aethina tumida (small hive beetle): 109599340
Entry
109599340         CDS       T06105                                 
Name
(RefSeq) general transcription factor IIH subunit 4
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
atd  Aethina tumida (small hive beetle)
Pathway
atd03022  Basal transcription factors
atd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:atd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109599340
  09124 Replication and repair
   03420 Nucleotide excision repair
    109599340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atd03021]
    109599340
   03400 DNA repair and recombination proteins [BR:atd03400]
    109599340
Transcription machinery [BR:atd03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     109599340
DNA repair and recombination proteins [BR:atd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     109599340
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 109599340
NCBI-ProteinID: XP_019870883
Position
1:complement(join(38062080..38062464,38062535..38062728,38062789..38062872,38062943..38063123,38063186..38063371,38063426..38063557,38063640..38063744,38063805..38063962))
AA seq 474 aa
MAENDIGSRKLHQSLLSTSNLECKNLYDYLKTRPQNILEKLYNHPTICLAVYRELPELAR
QYVIRILFVEQPVPQDMVASWGSQAFSKEHVYVSKVLTELSVWQEAAIPGGLLGWILSPT
FKRNLKIALLGGGKPWSMSSALEADNKARDVSFLDTYSLGRWECVLHYMVGSQQQEGISA
DAVRILLHAGLMRRDEDDGSPVITRQGFQFLLLDRQAQVWHFILQYLDTVEQRDLDLVEC
LTFLFQLSFSTLGKDYSTEGMSPGLLVFLQHLREFGLVYQRKRKAGRFYPTRLALNITSS
NNKGSPTIDEDTPKGYIVVETNYRLYAYTDSNLQVALIGLFTELMYRFPNLVVGVITRDS
IRQALRGGITADQIIGYLRQHAHSQMIQQEGKNPLPPTVVDQIKLWELERNRLTYSEGVL
YSQFLSSADFNVLKQYAQNNGQLVWCNKDKRTLVIKKAAHDDVRKFWKRFSKGT
NT seq 1425 nt   +upstreamnt  +downstreamnt
atggctgaaaatgatattggttctcgtaaacttcatcaatcactgttaagcaccagtaat
ctggaatgtaagaatctgtatgattatttgaaaactcgaccccaaaatatattagaaaag
ctctacaatcatccaacaatatgtttagctgtgtacagagaactacccgaattagcaaga
caatatgtgatacgaatcttatttgtagagcaaccagtcccacaagacatggttgcctca
tggggttcacaagccttttccaaagaacatgtatatgtaagtaaagtattaacggagctc
tcagtatggcaagaagctgcaatacctggtggcttacttggatggattttatcacctact
ttcaagagaaatttaaaaatagcacttcttggaggggggaaaccatggagtatgtcatca
gcattagaggccgacaacaaagccagagacgtgtcgtttcttgacacatattctctaggt
cgttgggaatgcgtcttgcattacatggttggttcacagcaacaggaaggaatctctgca
gatgctgtcagaattctcttgcatgctggacttatgagaagggacgaggatgatggcagt
cctgttattacacgacagggatttcagttcctattgctggataggcaggcacaagtctgg
cattttatactgcagtacctggacacagttgaacaaagagacctggatttggtcgaatgt
ttaacattcctttttcaacttagtttcagtacattaggaaaggattatagtaccgaaggg
atgagcccaggtttattggtatttcttcaacacctgagagaatttggtttggtttaccaa
agaaaaagaaaagcgggtcgattttacccaacaagattggcattaaatataacaagtagt
aataataaggggtcacccacaatagatgaagatacaccaaaaggctacatcgtagtcgaa
acgaattacaggctgtatgcttacacagattctaatctccaagtggccttgatagggctc
tttactgaactgatgtataggtttccaaacttagtagtaggcgtgataaccagagactca
ataagacaggccctgcggggtggcatcactgccgaccaaataataggctacctcaggcag
cacgcgcactcccagatgatccagcaggagggcaagaacccgctgccgcccaccgtcgtc
gatcagatcaagctgtgggagctggagcggaaccggctcacgtacagcgagggcgtgctc
tacagccagttcctctcctcggcggacttcaatgtgctcaagcagtacgcgcagaataac
ggccagctggtctggtgcaacaaagacaagaggacgttggtgattaaaaaggcggcgcac
gatgacgtgaggaagttctggaagcgattttccaagggtacatag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

Download RDF
DBGET integrated database retrieval system