KEGG   Arabidopsis thaliana (thale cress): AT1G53690
Entry
AT1G53690         CDS       T00041                                 
Name
(RefSeq) DNA directed RNA polymerase, 7 kDa subunit
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AT1G53690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT1G53690
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT1G53690
Transcription machinery [BR:ath03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     AT1G53690
  RNA polymerase III system
   RNA polymerase III
     AT1G53690
  RNA polymerase I system
   RNA polymerase I
     AT1G53690
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      AT1G53690
SSDB
Motif
Pfam: DNA_RNApol_7kD A2L_zn_ribbon OrfB_Zn_ribbon HVO_2753_ZBP zinc_ribbon_13 FtrD-like
Other DBs
NCBI-GeneID: 841806
NCBI-ProteinID: NP_001319215
TAIR: AT1G53690
UniProt: A0A1P8AV79 A0A384LER3
Position
1:complement(20042452..20043626)
AA seq 60 aa
MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIV
NT seq 183 nt   +upstreamnt  +downstreamnt
atggatctacaacagtccgaaacagatgataaacagcccgaacaactagttatttacgtc
tgcggagattgtggacaagagaacattttgaagcgtggagatgtgttccaatgcagagat
tgtgggttccgtattctctacaagaagcgtattctcgacaagaaggaaacccgtatagtt
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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KEGG   Arabidopsis thaliana (thale cress): AT5G41010
Entry
AT5G41010         CDS       T00041                                 
Symbol
NRPB12
Name
(RefSeq) DNA directed RNA polymerase, 7 kDa subunit
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AT5G41010 (NRPB12)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT5G41010 (NRPB12)
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT5G41010 (NRPB12)
Transcription machinery [BR:ath03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     AT5G41010 (NRPB12)
  RNA polymerase III system
   RNA polymerase III
     AT5G41010 (NRPB12)
  RNA polymerase I system
   RNA polymerase I
     AT5G41010 (NRPB12)
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      AT5G41010 (NRPB12)
SSDB
Motif
Pfam: DNA_RNApol_7kD DUF5816 YjdM_Zn_Ribbon HypA zf-ribbon_3 DUF1451 zinc_ribbon_13 zinc_ribbon_10 DZR zf-trcl OrfB_Zn_ribbon Zn-ribbon_8 A2L_zn_ribbon PHD Prok-RING_1
Other DBs
NCBI-GeneID: 834103
NCBI-ProteinID: NP_198917
TAIR: AT5G41010
UniProt: Q9FLM8 A0A654G6Z4
Structure
Position
5:16423919..16425324
AA seq 51 aa
MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR
NT seq 156 nt   +upstreamnt  +downstreamnt
atggatccagcgcccgaacccgttacttacgtctgcggagattgtggtcaagagaacact
ttgaagtctggggatgtgatccaatgcagagagtgtgggtaccgtattctctacaagaag
cgtacccgtagagttgttcaatacgaagctcgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (2)   
   PDB (2)   
Protein domain (15)   
   Pfam (15)   
All databases (66)   

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