KEGG   Bacteroidetes bacterium: AEM51_05875
Entry
AEM51_05875       CDS       T04336                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bbau  Bacteroidetes bacterium
Pathway
bbau03030  DNA replication
bbau03410  Base excision repair
bbau03420  Nucleotide excision repair
bbau03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bbau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AEM51_05875
   03410 Base excision repair
    AEM51_05875
   03420 Nucleotide excision repair
    AEM51_05875
   03430 Mismatch repair
    AEM51_05875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bbau03032]
    AEM51_05875
   03400 DNA repair and recombination proteins [BR:bbau03400]
    AEM51_05875
Enzymes [BR:bbau01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AEM51_05875
DNA replication proteins [BR:bbau03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AEM51_05875
DNA repair and recombination proteins [BR:bbau03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AEM51_05875
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AEM51_05875
   MMR (mismatch excision repair)
    DNA ligase
     AEM51_05875
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AEM51_05875
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 Nlig-Ia BRCT_2 5_3_exonuc RNA_ligase RNA_lig_T4_1 cwf21 Legionella_OMP Auto_anti-p27 HHH Topo-V_HhH_2_2nd
Other DBs
NCBI-ProteinID: AMS26623
UniProt: A0A142L327
Position
1339190..1341274
AA seq 694 aa
MNELEAAIRMDELITTINHHNYNYYTLSKPTISDSDFDFLLKELESLEKQFPHLSKPDSP
TQKVGGSITKEFVQVKHKYPMMSLGNTYSEEELKEFDERVRKTIGDDVEYVVELKFDGLA
ISISYENGAIARAVTRGDGMMGDDVTNNVKTIKSIPQQLPAGDYPASFDIRGEIFMHRKT
FEKLNNDYRAELEAKGFDEDEIKEKLYKNPRNFASGTLKMQDSREVAKRPLDCFLYFIYA
DQPVAQTHYDSLKKAADWGFQVSDHFKLCKSIDEVMDFIHFYDKERENLSYEIDGVVIKV
NRYEQQQELGFTAKNPRWAISYKYKAQNALTQLEKITYQVGRTGAITPVANLTPVQLAGT
TVKRASLYNADEIERLDLHEGDWVYVEKGGEIIPKVTGVELSKRLPDAVKYSYANTCPEC
STTLVRKEGEVVHYCPNETGCAPQLIGRIEHFIGRKAMNIDSLGGETIAGLYQKGLIRNY
ADLYSLTADQLLGLEFETYNEKKDQWGKRSLQEKSVVNVLQGIEDSKKVPFEKVLFALGI
RMVGETVAKKLAKHFRSMDKLMAASKEEIASIYEIGDKIAENVVRFFSETENILICNQLK
QYGLKLEVEEEEGVTRTNLLEGKSFLVSGVFSMSRDELKNMIERNGGRNVGSISKSLNYL
IAGDKMGPEKLKKATDLNIPIISEEEFMKMLDRD
NT seq 2085 nt   +upstreamnt  +downstreamnt
atgaatgaactagaagctgctatacgaatggatgagttgattacaacaatcaaccatcac
aattataattattacacgttatccaaacctaccattagcgattcagattttgattttttg
ctcaaagaactcgaatcgttagaaaaacaatttccgcatttaagtaaacccgattcacca
acacaaaaagtaggcggaagcataaccaaagagtttgttcaggttaagcataagtacccg
atgatgagtttgggtaatacgtattcggaagaagaattgaaagagtttgacgagcgggtg
cgcaaaaccattggtgacgatgttgagtatgttgttgaattaaaatttgatggtttggca
atcagtatttcatacgaaaatggtgcaattgctagagcggtaacacgtggtgatgggatg
atgggcgatgatgttaccaacaatgttaaaaccataaaatcgattccgcaacaattgccc
gcaggcgattatccggcatcatttgatattcggggtgagatttttatgcaccgcaaaaca
tttgaaaagcttaacaacgactatcgtgctgagctggaagcaaaaggatttgatgaggat
gaaatcaaagaaaaattgtataaaaatccgcgcaactttgcttcgggaaccttgaaaatg
caagattcacgtgaggttgctaaacgcccgctcgattgttttttatattttatttatgct
gaccagcccgttgcgcagacacattacgatagtttgaaaaaggcggctgattggggtttt
caggtgagcgatcattttaagttgtgcaaaagcattgatgaggtaatggactttatccat
ttttatgataaagagcgtgaaaacctgagttacgaaattgatggcgtggttatcaaagta
aatcgatacgagcagcagcaagagttaggttttacggctaaaaatccgcggtgggctatc
tcttataaatacaaagcacagaatgcattaacccaactcgaaaaaataacgtatcaagta
ggacgtacgggagcaataacacctgttgccaaccttactccagtgcagttggcaggcaca
acggtaaaacgtgcaagcttatataatgccgatgaaatagagcgcttggatttgcatgaa
ggagattgggtatatgtagaaaaaggaggtgaaattataccgaaagtaaccggtgttgag
ttaagtaaacgattaccagatgctgttaagtatagctacgcaaatacttgcccggagtgc
agtacaacacttgttcgtaaagaaggggaagttgtgcattattgtccgaacgaaaccgga
tgcgcaccccagcttatcggcagaatagagcattttattggtcggaaggccatgaatatt
gatagtttgggtggcgaaacaattgccggtttatatcaaaaaggattgattcggaattat
gctgacttatactcgctcacagccgatcaattattaggcttggagtttgaaacctataat
gagaagaaggatcaatggggaaaacgttccttacaggaaaagtcagtggttaatgttttg
cagggaattgaagattctaaaaaagtacccttcgagaaagtgctctttgcattgggtatt
cgtatggtgggcgaaactgttgctaaaaaattagctaaacactttcggtcgatggataaa
ttgatggcagcaagcaaagaggaaattgcatctatttatgaaataggagataagattgcc
gaaaatgtggtacgttttttctcagaaaccgaaaacattctaatctgcaaccaactcaaa
caatacggacttaaacttgaggttgaagaggaggaaggggttacgcgaaccaatttgctg
gagggtaaaagttttttagtttctggtgtgttttcgatgagtagagatgaattgaaaaac
atgattgaacgcaatggtggtcgcaatgttgggagtatcagcaaaagtttaaactatttg
atagcaggagataaaatgggtcccgaaaaattgaagaaagcaactgacttaaacataccc
ataattagcgaagaagagtttatgaagatgctcgatagagattag

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