KEGG   Belliella baltica: Belba_0333
Entry
Belba_0333        CDS       T02134                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
bbd  Belliella baltica
Pathway
bbd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bbd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Belba_0333
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbd03019]
    Belba_0333
   03400 DNA repair and recombination proteins [BR:bbd03400]
    Belba_0333
Enzymes [BR:bbd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Belba_0333
Messenger RNA biogenesis [BR:bbd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Belba_0333
DNA repair and recombination proteins [BR:bbd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Belba_0333
SSDB
Motif
Pfam: RQC DEAD HTH_40 Helicase_C HRDC RecQ_Zn_bind Helicase_Sgs1 ResIII GerE DUF357
Other DBs
NCBI-ProteinID: AFL82996
UniProt: I3Z178
Position
complement(344530..346665)
AA seq 711 aa
MNQAESVVKSEGILKEFFGYSEFRGNQKQIIQSVLSKKDTIVLMPTGGGKSVCYQVPAMI
FDGLTLVISPLISLMKDQVDALNANGIPAAFLNSSQSQSEQRFISSQIQSGKIKLLYIAP
ERLYRGDYPLIDFLKTVNLSLVAIDEAHCVSQWGHDFRPEYLKIGELRKSFPQIPFIALT
ATADKLTRKDIADKLGLKTPQWFISSFDRSNITYRVTAKRDAMGKLLEFLDFHKKDSGVI
YCLSRKNVEETASELQARGLSALPYHAGLPREEREKNQELFIKDEVKIMVATIAFGMGID
KSNVRFVVHMNMPQNVEGYYQETGRAGRDGLPSDALLFYSGQDANTLGRMLDRGDNQEFA
HVMQEKLEKMKSFCQTKICRRKFLLNYFGEDHTGDCGNCDICFQKGNRQDMTIPSQMLLS
TIARLGESFGIGYVLLILRGSKSAKVQEAHQSLSVYGIGKDRPESFWKDLCDKLVQEDYL
AEAGAQFPTLKLTEFAWQKLKAKEKILLPMEEALPEVSNKPSTYHEELLDELKALRFSIA
QKSGVPPYVVFADSSLVEMATYLPIDEQSFLEISGVGQVKAQSYGSDFMKIIADYAEKNK
LTPKRKILTQRTKPLRNSQSELMTMKLFNEGKNIYQIAEARGMTFNTVEDHLVNMVKKKE
LDAEKFLSKDDLLNIRLAYRRQGTHFLKPLKEHFGERYSYFQLKVALAEER
NT seq 2136 nt   +upstreamnt  +downstreamnt
atgaaccaagctgaatcagtagttaagtcagaaggaatactaaaggaattttttgggtat
tctgaatttaggggaaatcagaagcagattattcaatcagttctttcaaaaaaagacacc
attgtcttgatgccgacaggtggagggaaatctgtatgttaccaagttcctgcaatgatt
tttgatggattgacattggtgatttcgcctttgatctctttgatgaaggatcaagtagat
gctttaaatgcgaatggaattcctgccgcttttttaaattcctctcaaagtcaaagtgag
cagcgctttatttcttcacagattcaatcaggaaaaatcaagcttttatacattgctccg
gagcgcttgtatagaggtgattatccattgatagactttttgaaaaccgtgaatttatct
ctcgtcgctatagatgaagcacattgtgtttcccaatggggacatgattttaggcctgaa
tatttgaaaattggcgagttgagaaaatcatttcctcaaataccctttatcgcattgacg
gctacggcggataagttgactagaaaggatattgctgataagttggggttaaaaacgcca
cagtggtttatttcctcttttgacagaagcaatatcacctatcgggttactgcgaaaaga
gatgcaatggggaaactgttggaatttttggatttccataaaaaagactcaggtgtaatt
tattgtctttctagaaaaaatgtagaagaaaccgcctccgaattgcaagcccgaggatta
tcagctttgccttatcatgcggggttgccaagagaggagcgggagaaaaatcaagaactt
ttcatcaaagatgaagtgaaaatcatggtggcaaccatagcttttggaatggggatagat
aaatcaaatgtgcgatttgttgttcacatgaatatgccccagaatgtagaaggttactat
caggaaacaggaagggcaggtcgagatggcctgccgagtgatgccttgcttttttactca
ggtcaagatgccaataccttgggcagaatgctggatcggggagataatcaggagtttgcc
catgtgatgcaagagaagctggaaaagatgaaatcattctgtcagacgaaaatttgtcgg
aggaaatttttattgaattactttggagaagaccatacaggagattgtggcaattgtgac
atttgcttccaaaaagggaataggcaagacatgactattccctcgcagatgttgctatcc
accattgcaagattaggagaaagtttcgggattggctatgtgttgttgatcctccgaggc
tccaaatccgccaaagtacaagaagcacatcaaagcttaagtgtttatgggattgggaaa
gacaggcctgagtccttttggaaggatttgtgcgacaaactggttcaagaggattatttg
gcagaagctggagcacagtttccaaccctgaaactcacagaattcgcttggcaaaagtta
aaggctaaagagaaaattttgctgccgatggaagaggctttgccagaagtctccaataaa
ccgagtacatatcatgaagaattgttagatgaattgaaagcattgagattttcgattgca
cagaaaagtggcgtacctccttatgtggtttttgctgacagttccttggttgagatggct
acttatttgccgattgatgaacaatcattcttggagatttctggtgttggacaggtgaaa
gcacagagttatggaagtgattttatgaaaataattgctgactatgcggagaaaaacaag
cttactcccaagcgaaagattctaacccaaagaaccaaaccacttcggaattcgcagtct
gagttgatgacgatgaaacttttcaatgaaggaaaaaatatttatcaaatcgcagaagca
agagggatgactttcaatactgtggaagatcatttggtgaatatggtcaagaaaaaggaa
cttgatgcggagaaatttctttcaaaagatgatcttctcaatattcgattggcttacaga
cgacaggggacacattttttgaagccattaaaagagcactttggagaaaggtattcttat
tttcagttgaaagttgctttggcggaggaaaggtaa

  All links  
Gene (17)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (28)   

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