KEGG   Bdellovibrio sp. NC01: DOE51_19080
Entry
DOE51_19080       CDS       T06360                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bdc  Bdellovibrio sp. NC01
Pathway
bdc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bdc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    DOE51_19080 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bdc03400]
    DOE51_19080 (mfd)
Enzymes [BR:bdc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DOE51_19080 (mfd)
DNA repair and recombination proteins [BR:bdc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      DOE51_19080 (mfd)
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID ResIII Cas3-like_C_2 RecG_dom3_C
Other DBs
NCBI-ProteinID: QDK39552
UniProt: A0A514X1B6
Position
3948275..3951796
AA seq 1173 aa
MKAEMTHTRLESILERAFETSRGKIQVTGASSPLALAFFLSQTYSKKINSLPHLVVVGSH
EEALELQQLIEFFDPLRQSTILSAFDVSAYSGLYPNSQSVSDRLNFLAKAQNAKAGEIFI
SSSDALMQKTLPPKILKEFTRVLKSGDELPEDIAGYLNSLGYVSAPMVEDKGQYALRGGI
VDIFPPTEKMPVRLDLFGDQVETIRHFSVEDQRSADEIQSFTLCPAREVLFRDEVHEKLL
QRVRANIDSRPVEKAEAEETLRSLVLKNAFPGIEFLIPYFYGELVSPLAHFPSALNVFFL
DPIEIARCADEFMADLKADFATSEAHVIRPLMDELYVGFDKIDYPQGSRQLYFSSLEYLE
GEESADANVEYKTALTTDFTNLSRSNAVGSEEWLRAATNKLHRWRDEGYRIFVGTKNQSH
IDRLALIFEKLELKAVRTRDDEYKWDSWLQEQDGDKHLVHIIPRYLADSLRLDEEMVIFL
RDEDFYGKKTRSRESSGAQDFQKQAKRLAFGDLKPGDLVVHVKHGIGVYEGLKIMNIGGV
DSEYIQVGYKDKDKLYLPVYRVGQLQKFSGAGATSVLDKLGGTAWEKTKAKVKSHVRDIA
ADLLALYAKRAEMHRPPFHFKEEEIALFENGFPYEETDDQLRAIGDISRDLTSTKPMDRL
VCGDVGFGKTEVAMRAAFFAIQARKQVAVLAPTTVLTFQHFETFKKRFEGWPVDIRVLNR
FVTPAETKKTIQDLKDGKVDLVVGTHKLLGSSIAYKDLGLLIIDEEQKFGVTHKEKIKKI
RTSVDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRLPTRTFVTKFDQETIRKAISAE
ISRGGQVYFIHNRIESIYGLADEIRQIVPEARIRVAHGQMEEHELEKAMLAFFHHEIDVL
ICTAIVESGMDVPRANTMFIDSAHMFGLSQLYQLRGRVGRSKTRAYCYLMMPRDRKLDKE
QQERLKIIQENTALGSGIKIAQYDLELRGSGNILGEEQSGHVNTVGYELYMDLLNEALAE
AKGESVEDMELDPEINLKIPALIPDAYIKDIRIRLGYYKALAEISSQDDLDRIEEELRDQ
FGPIPDQTVNLMGLMLIRRQCKELGVRDVSAGVKSVSLIFTEKTKLKPEVVIQLAVRESK
KYSLTPDNRLNIKLSTISWSAVYEELEQLLRLI
NT seq 3522 nt   +upstreamnt  +downstreamnt
atgaaagcagaaatgactcatacaaggctcgagtcgattctcgaaagagccttcgaaaca
tcacgcggaaaaattcaagtcacgggagcctcgtcaccgctcgcgctcgctttctttttg
tctcagacttactctaaaaaaatcaacagcttgccgcacttagttgtagtcggcagtcac
gaagaagcacttgaacttcagcagctcattgagttctttgacccacttcgtcagagcaca
attctgtctgctttcgacgtttcggcttactccggactttatccaaactcgcaaagtgtt
tcggatcgtttaaattttttggcgaaagcgcagaacgcgaaagccggagaaatcttcata
tcttcttctgacgcgttgatgcaaaaaactttgccgccgaaaattttgaaagaatttact
cgcgttttgaagtcgggcgatgagcttccggaagatatcgcgggttatttgaactcgctg
ggttacgtctcggcaccgatggttgaagacaaaggccaatatgctttgcgtggtggtatc
gttgatatctttccaccaaccgaaaaaatgccagtgcgtttggatttgttcggcgatcag
gtcgaaacgattcgccacttcagtgttgaagatcaaagaagtgccgacgaaattcagtcc
ttcactttatgtcctgcgcgcgaagttttattccgcgatgaagttcacgaaaaacttttg
cagcgagtgcgcgcaaatattgattcgcgtcctgttgaaaaagccgaagctgaagaaaca
ctacgctctttagttttaaaaaatgcttttcctggaattgaatttcttattccgtatttt
tatggcgagttggtttcaccacttgcgcacttcccgtctgctttaaatgtgtttttctta
gatccgattgaaatcgcacgttgtgctgatgaattcatggctgatcttaaagcagacttc
gcaaccagcgaagcccatgtcattcgtccgctcatggacgagttatatgtgggctttgat
aaaattgactatcctcaaggttcgcgccaattgtatttctcgtctttagaatatctcgag
ggcgaagaatctgccgacgcgaatgtagaatacaaaacggctttaaccacagacttcacg
aatttaagtagatctaatgcagttggctctgaagagtggttgcgtgccgctactaataag
cttcatcgttggcgcgacgaaggttatcgcatctttgttgggactaaaaatcagtcgcac
attgatcgtcttgccttgattttcgaaaaacttgaactgaaagctgtgcgcactcgcgat
gacgaatacaaatgggattcgtggttgcaagagcaagatggcgacaaacacctcgtccat
attattccacgctatcttgctgacagtcttcgccttgacgaagaaatggttattttcctt
cgtgatgaagatttctatggcaagaagactcgctcgcgtgaatcttcgggtgcacaggat
ttccaaaaacaagcgaagcgtcttgcattcggtgatttaaaacctggcgatctggttgtg
cacgtgaaacacggtatcggtgtttacgaaggccttaagatcatgaacatcggcggagtt
gactctgaatacattcaggtcggctacaaagataaagataaattatatctgcccgtctat
cgtgtcggtcagttgcagaaattctcgggcgcaggtgcaacttcagttttagataaactg
ggtggcacggcttgggaaaaaacgaaagccaaagttaaatcacacgttcgtgatatcgct
gccgacttgttggccctttacgcaaaacgcgcagaaatgcatcgcccgccattccatttc
aaagaagaagaaatcgctttatttgaaaatggttttccttatgaggaaaccgacgatcag
ttacgcgccatcggtgatatctctcgcgatttaacttcgaccaaaccgatggatcgtttg
gtgtgtggtgacgtgggctttggtaaaaccgaagtggcaatgcgtgcggcgttctttgcg
attcaagcacgtaaacaagtggccgtgcttgcgccgacgaccgtattaacattccagcac
tttgaaacatttaaaaaacgttttgaaggatggcccgttgatattcgagttttgaatcgt
ttcgttacgccggcagaaactaaaaagactattcaagatttgaaagatggaaaagtcgat
cttgtggtgggcactcataagcttttgggttcatcaattgcctataaagacttaggtctt
ttgattatcgacgaagaacaaaaattcggcgtcactcataaagagaaaattaaaaagatc
cgcaccagtgtcgacacgctgacattgtcagcgacaccgattccacgcacattaaatatg
gcattggttgggattcgcgatttaagtttaatcaataccgcacccgtcgatcgtttgccg
actcgtacgttcgtgacgaaatttgatcaagaaacaattcgcaaggccatcagtgcagaa
atttcgcgcggcggtcaggtttatttcattcataaccgtatcgaatctatttacggctta
gcagatgaaatcagacaaatcgttcctgaagcacgtattcgtgtagcccatggacaaatg
gaagaacacgaacttgaaaaagcgatgcttgccttctttcatcatgaaattgacgttcta
atttgtacggcgatcgttgaatcgggcatggacgtgccacgcgcaaatacgatgttcatc
gattcagcgcacatgtttggtttatcacagctctatcaattgcgcggccgtgtgggtcgc
agtaagacgcgtgcgtattgttacttgatgatgccgcgtgatcgtaagttggataaagaa
caacaagaacgtttgaagatcattcaagaaaacacagcactgggcagcggtattaaaatc
gcgcagtacgatttagaattgcgtggctctggaaatattttaggtgaagagcaatccggt
cacgtcaacactgtcggttatgaactgtacatggatcttttgaatgaagctttggccgaa
gcaaaaggtgaatctgttgaagacatggagcttgatccagaaatcaatttgaaaatccct
gctttgattccggatgcttacatcaaagatattcgtattcgtttaggttactacaaagcc
ttggcagagatcagctcgcaagacgatctagatcggattgaagaagaactgcgcgatcag
ttcggtccaatcccagatcaaacagtgaacttgatgggtctgatgctgatccgtcgtcaa
tgtaaagagcttggcgtgcgtgacgtcagcgccggagtcaaatccgtgtcattgatcttc
acagaaaaaacaaaactaaaaccagaagtggtgatccaactcgcagtcagagaatccaaa
aaatactctctaactccagacaaccgcctgaacatcaaactcagcacaataagctggtca
gcagtctacgaagaactagaacaactcctaagactcatctag

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (10)   

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