KEGG   Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_1343
Entry
BBDE_1343         CDS       T04222                                 
Name
(GenBank) DNA topoisomerase IV subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
bdn  Bifidobacterium dentium JCM 1195 = DSM 20436
Brite
KEGG Orthology (KO) [BR:bdn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bdn03032]
    BBDE_1343
   03400 DNA repair and recombination proteins [BR:bdn03400]
    BBDE_1343
Enzymes [BR:bdn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     BBDE_1343
DNA replication proteins [BR:bdn03032]
 Prokaryotic type
  DNA Topoisomerases
   BBDE_1343
DNA repair and recombination proteins [BR:bdn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BBDE_1343
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3
Other DBs
NCBI-ProteinID: BAQ27337
Position
complement(1582327..1584663)
AA seq 778 aa
MAKDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGACNHIV
VTLHSDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGS
SVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELEI
IGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPETG
DESIDEMREIDVPADGTSDAVVDATDEVDDTDNIGSAIEGFDEVAVDNADEVESPENATG
DEQPEQPSQPARQRYGHARVEEFCHNGGVKDFVDFLSKGEAVSDIWRITGDDTYVEETQA
VGEGGELHAQKVTRDCAVDIAMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIR
KAVEDNARKLKVNLKDSNMKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIV
TRMTDRQFGEMITGSKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPP
KLSDCQPGNDDVAELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNK
ECAAIIQVVGAGSGASFDIEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGH
VYAAVPPLHRIALTGAHKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDAD
QLADTTMDPRTRMLRRIRMEDAEQANEIFSLLMGDDVPPRKAFIVENADDFDRSKIDT
NT seq 2337 nt   +upstreamnt  +downstreamnt
atggccaaggataattacggcgcaggcagcctaaccgtgctggaaggtctggacgcggtg
cgcaagcgtccgggcatgtacatcggcacgaccgacagccagggtctgatgcactgtctg
tgggagatcatcgacaactccgtcgatgaggcccttgccggtgcctgcaaccatattgtc
gtgacgttgcattccgatggttccgtcgaagtcgccgacaacggccgcggcattcccgtc
gacgtggaaccgaaaaccaagcttaccggcgtggaagtggtgctcaccaagcttcacgcc
ggcgcgaagttcggcaattcctcctatggcgcttccggcggtttgcatggcgtgggctct
tcggtggtcaacgctttgagctcccgacttgacgtcgaagtggatcgtgacggcaaaacg
catcacatgtcgttccaccagggacatcccggtgtgtacgccgatgcggatccggagcat
ccgtctcccgattcgccgttcaaacgcacgcgcaagaaccgtccgaccgagttggagatc
atcggcaaggtcagtccgaagaccaccggtacccgtatccgatattgggccgatccggaa
atcttcaatgacaccgccgaattcagttatgagcagcttatcgaccgtgtacgccagacc
agttttctggtaccgggactgaaaatcaccgtcattgacgagaatattcccgaaaccggt
gacgaatccatcgacgaaatgcgggagatcgacgtaccggcggacggaacgtcggatgcc
gtggtggacgctacggacgaggtggacgatacggataatatcggatcggcgatcgaaggc
ttcgatgaagtagcggtagacaatgccgacgaagttgagagcccagagaacgctaccggt
gatgagcaaccggagcaaccgtcgcaaccggcgcgacagcgctacggtcacgcgcgtgtc
gaggaattctgccacaacggtggggtgaaggacttcgtcgacttcctctccaaaggcgag
gcggtctccgacatttggcgcatcaccggtgacgacacttatgtcgaggagacccaggcc
gtaggcgaaggcggcgaactgcacgcgcagaaggtcacccgcgactgtgccgtcgatatc
gccatgcgttggaccgacggttacgacaccaccatgcgcagcttcgtgaacgtggtcgaa
actcccggcggcggtatgcatgtggatggtttcctgcaaggcatcaccaaacagatccgc
aaggccgtggaggacaacgcgcgcaaactcaaggtgaatctcaaggattccaacatgaag
gtcgagcgcgacgacatcatggccggcctcgtggccgtggtgaccgtacgtatcgccgaa
ccccagttccaggggcagaccaaggatgtgctgggtaccgcgcaggtcaaaccgatcgtc
acccgcatgaccgacaggcagttcggcgagatgatcaccggttccaagcgtggctacaag
gagcaatccggccgcgtacttgaaaagatcgtcggtgagatgcacgcccgcattcaggcg
cgtaagaccaaagaggtcacccgccgtaagaatgcgctcgaatccgcttccatgccgccg
aaactgtctgattgccaaccgggcaacgatgatgtggcggaactgttcatcgtcgagggc
gattccgcattgggcaccgccaaggccgcacgaaactccggtttccaggcgttgttgccg
attcgaggcaagattctcaacgtgcagaaggcctcactggcgcaaatgctgtcgaacaag
gaatgcgcagccatcattcaggtggtcggcgcgggttccggggccagtttcgatatcgag
caggcacgatacaacaaaatcatcatgatgaccgatgccgatgtcgatggcgcgcatatc
cgcattctgctgctcacgctgttctaccgctacatgcgtccactcatcgagcacggtcac
gtgtatgccgccgttccgccattgcatcgcatcgccctgaccggcgcgcataagggcgag
tacatctatacctattccgatgacgagctggccggcaaactttccgagctcgagcgcaaa
catatcgcctataacgatgacattcagcgctacaagggcttgggtgagatggatgccgac
cagctcgccgacaccaccatggatccgcgtacgcgcatgctgcgccgtatccgcatggag
gacgccgaacaggccaacgagatcttcagtctgctcatgggcgatgacgtgccgccgcgc
aaggcgttcatcgtcgagaacgccgatgatttcgaccgttccaagatcgatacctga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (7)   

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