KEGG   Burkholderia humptydooensis FDAARGOS_899: I6G56_12690
Entry
I6G56_12690       CDS       T08266                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bhg  Burkholderia humptydooensis FDAARGOS_899
Pathway
bhg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bhg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    I6G56_12690 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bhg03400]
    I6G56_12690 (mfd)
Enzymes [BR:bhg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     I6G56_12690 (mfd)
DNA repair and recombination proteins [BR:bhg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      I6G56_12690 (mfd)
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C MFD_D3 CarD_TRCF_RID ResIII UB2H Cas3-like_C_2 SNF2-rel_dom Glyco_tran_WecG ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: QPS42474
UniProt: A0A7T2TZ11
Position
1:2491370..2494939
AA seq 1189 aa
MKSKDGFYNTSFAAMSRAELVRHPASANQPLAMSDNASPSQSPIALVKAGQRFAFDGAHG
SADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPDARVRVLPDWETLPYDT
FSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFLAAYTFSFTQGERLDEAK
LKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPMGSPLPYRIDLFDDQVDSIRAFDPDTQ
RSLYPVRDVRLLPGREFPFDEAARTAFRSRWRETFEGDPSRSPIYKDIGNGVPSAGIEYY
LPLFFDETATLFHYLPERAQLVFAGDLDAAIKRFTADTKQRYAFLSHDRERPILEPQRLF
LSDDDFYLLAKPFARLVLPAQPAGGWAAPLPNLALDRHADAPLAAFVAYLETTKNRVLFT
VESAGRRETIAQLFAEHHLRPAGSDSFAAWLESDERFALGVAPLASGFAVPGEGYAIVTE
TELYGALGRRAGRRRQEQASNVDAMVRDLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGE
TEFLHLEYASDSKLYVPVAQLHVISRYSGADPDSAPLHALGSGQWERAKRRAAQQIRDTA
AELLNLYARRAAREGHAFALDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRL
VCGDVGFGKTEVALRAAFIAVLGGKQVALLSPTTLLAEQHTQTFIDRFADWPVKIVELSR
FKSTKEVNTAIQQINEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKAL
RAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRSEDESVIREAMLRE
LKRGGQVYFLHNEVETIENRRAMLEALVPEARIAIAHGQMHERELERVMRDFVAQRANVL
LCTTIIETGIDVPSANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQ
AQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTEMLNDAVKA
LKNGKEPDLTAPLAATTEINLHAPAILPADYCGDVQERLSLYKRLANCEHGDSIDGIQEE
LIDRFGKLPPQAHALVETHRLRLAAKPLGIVKIDASEAAIGLQFVPNPPIDPMRIIDMVQ
KHRHIKLAGQDKLRIETRTPDLAVRVSTVKETLRALGQPQQSRAQAAAR
NT seq 3570 nt   +upstreamnt  +downstreamnt
atgaaatcgaaagacggattttataatacgtctttcgccgcgatgagccgcgccgagctc
gtccgccatccggcgtccgccaaccagccgctcgctatgtcagacaacgcctccccttcg
cagtcccccatcgcgctcgtcaaggcgggccaacgcttcgcattcgacggtgcgcacggc
tccgccgacgcgctcgtcatcgcccgctatctcgctgcgcaccgcgcgcaggtgccgctt
ctcgccgtgatctgcgcgaacgcggtcgacgcgcagcggctcgcgcaggaactgcgctac
ttcgcgcccgacgcgcgcgtgcgcgtgctgcccgactgggagacgctgccgtacgacaca
ttctcgccgcaccaggatctcgtgtccgagcggctcgcgacgctgcacgacctgggcgaa
ggccgctgcgacatcctgctcgtgccagcgacgacggcgctctaccgaatgccgcccgcg
tcgttcctcgccgcgtacacattctcgttcacacagggcgagcggctcgacgaagcgaag
ctgaaggcgcaactgacgctcgccggctacgagcacgtgagccaggtcgtgcggcccggc
gaatactgcgtgcgcggctcgctgatcgacctgttcccgatgggctctccgctgccgtac
cggatcgatctgttcgacgaccaggtcgactcgatccgcgcgttcgatccggacacgcag
cgcagcctctacccggtgcgcgacgtgcgcctcctgcccggccgcgagttcccgttcgac
gaggccgcgcgcaccgcgttcagaagccgctggcgcgagaccttcgaaggcgacccgagc
cgctcgccgatctataaggacatcggcaacggcgtgccgtcggccggcatcgaatactac
ctgccgctcttcttcgacgagacggcgacgctcttccactatctgcccgagcgcgcgcag
ctcgtgttcgcgggcgatctcgacgcggcgatcaagcgcttcacggccgacacgaagcag
cgctacgcgttcctgtcgcacgaccgcgagcggccgatcctcgagccgcagcgcctgttc
ctgtccgacgacgacttctatctgctcgcgaagccgttcgcgcggctcgtgctgcccgcg
cagccggcgggcggctgggccgcgccgctgccgaacctcgcgctcgaccgccacgcggac
gcgccgctcgccgcattcgtcgcgtatctggaaacgacgaagaaccgcgtgctcttcacc
gtcgaatccgcgggccgccgcgagacgatcgcgcaattgttcgccgagcaccatctgcgc
cccgcgggcagcgacagcttcgccgcgtggctcgagagcgacgagcgcttcgcgctcggc
gtcgcgcccctcgcgagcggcttcgcggtgccgggcgaaggttacgcgatcgtcaccgag
accgagctgtacggcgcgctcggccgccgcgcgggacgccgccgccaggagcaggcgagc
aacgtcgacgcgatggtgcgtgacctgtccgagctgaaggtgggcgacccggtcgttcac
gcgcagcacggcatcggccgctacatggggctcgtgtcgatggatctcggcgaaggcgag
accgagttcctgcatctcgaatacgcgagcgacagcaagctgtacgtgcccgtcgcgcaa
ctgcacgtgatctcgcgctacagcggcgcggacccggacagcgcgccgctgcacgcgctc
ggctccggccagtgggagcgcgcgaagcgccgcgccgcgcagcagatccgcgacaccgcg
gccgagctgctgaacctctatgcgcgccgcgcggcgcgcgagggccacgcgttcgcgctc
gatccgcgcgactacgtgaagttcgccgacagcttcggcttcgaggaaacgcccgaccag
gccgccgcgatcgcggccgtgatcggcgacatgacgagcggcaagccgatggaccgcctc
gtgtgcggcgacgtcggcttcggcaagaccgaggtcgcgctgcgcgcggcgttcatcgcg
gtgctgggcggcaagcaggtcgcgctgctgtcgccgaccacgctgctcgccgagcagcac
acgcagaccttcatcgaccgcttcgccgattggcccgtgaagatcgtcgagctgtcgcgc
ttcaagtcgacgaaggaagtgaacacggcgatccagcagatcaacgaaggcagcgtcgac
atcgtgatcggcacgcacaagctgctgtcgtcggacgtgcagttcaagcggctcggcctc
gtgatcatcgacgaggaacaccgcttcggcgtgcgccagaaggaagcgctgaaggcgctg
cgcgcggaagtggacgtgctcacgctgaccgcgacgccgatcccgcgcacgctcggcatg
gcgctcgagggcctgcgcgacttctcggtgatcgcgaccgcgccgcagaagcggctcgcg
atcaagaccttcgtgcgcagcgaggacgagagcgtgatccgcgaggcgatgctgcgcgag
ttgaagcgcggcggccaggtgtacttcctgcacaacgaggtcgagacgatcgagaaccgc
cgcgcgatgctcgaggcgctggtgcccgaggcgcgcatcgcgatcgcgcacggccagatg
cacgagcgcgagctcgagcgcgtgatgcgcgatttcgtcgcgcagcgcgcgaacgtgctg
ctgtgcacgacgatcatcgagaccggcatcgacgtgccgagcgcgaacaccatcatcatg
caccgcgcggacaagttcggcctcgcgcagttgcaccagttgcgcgggcgcgtcggccgc
tcgcaccaccaggcgtacgcatacctgctcgtgcacgatccgcaggcgctcacgaagcag
gcgcagcggcggctcgaggcgatccagcagatggaggagctcggctcgggcttctacctc
gcgatgcacgacctcgagatccgcggcacgggcgaggtgctcggcgacaagcagtcgggc
gagatccacgagatcggcttccagctctacaccgagatgctgaacgacgcggtgaaggcg
ctgaagaacggcaaggagccggacctcaccgcgccgctcgccgcgacgaccgagatcaac
ctgcacgcgcccgcgatcctgcccgccgactattgcggcgacgtgcaggagcggctgtcg
ctgtacaagcggctcgcgaactgcgagcacggcgattcgatcgacggcatccaggaagag
ctgatcgaccgcttcggcaagctgccgccgcaggcgcacgcgctcgtcgagacgcaccgg
ctgcggctcgccgcgaagccgctcggcatcgtgaagatcgacgcgagcgaagcggcgatc
gggctgcagttcgtgccgaatccgccgatcgatccgatgcgcatcatcgacatggtgcag
aagcaccggcacatcaagctcgcgggccaggacaagctgcggatcgagacgcgcacgccg
gacctcgcggtgcgcgtgtcgacggtgaaggagacgctgcgcgcgctcggccagcctcag
cagtcgcgcgcgcaggcggcggcacgatag

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (14)   

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