KEGG   Bombyx mandarina (wild silkworm): 114250101
Entry
114250101         CDS       T05882                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
  KO
K14401  cleavage and polyadenylation specificity factor subunit 1
Organism
bman  Bombyx mandarina (wild silkworm)
Pathway
bman03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bman00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    114250101
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bman03021]
    114250101
   03019 Messenger RNA biogenesis [BR:bman03019]
    114250101
Transcription machinery [BR:bman03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     114250101
Messenger RNA biogenesis [BR:bman03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     114250101
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd
Other DBs
NCBI-GeneID: 114250101
NCBI-ProteinID: XP_028039641
UniProt: A0A6J2KBI1
Position
Unknown
AA seq 1456 aa
MFSICRTTHPATGIEHAVSCYFFNNDEVCLVTAGANIIKVFRLLPEGHTKEINAAGQPIP
PKMKLECLATYTLWGNVMSLASVRCQSSGRDILLVSFKEAKLSVLQYDPQTNNLVTLSMH
YFEEDDMKGGWTTHPHIPWIRVDPEFRCAVMLLYGKKLAVLPFRKDITSEEGDPLEAKPL
SDTKKNQAAHTMNRAPTLASYIIILKDLDEKIDNILDIQFLHGYYEPTLLLLYEPVRTFP
GRTAVRNDTCAMAGVSLNMSARVHPVIWSTSGLPFDCLQAVPVPKPLGGCLIMAVNSLIY
LNQSVPPYGVSLNSVATHTTNFPLRIQEGVCMTLEGACVARLSDAVFAVSLRGGQLYVVA
LLADSVRSVRSFHIDRAAASVLTTCMCVIEEDFLFLGSRLGNSLLLRVTERENRMLFSVD
KPLEATVDLTVAETEREQSREKEQPDPASKRRRMDTISDCVASNVIEISDGDELEVYGSD
IRTSTRLTSYVFEVCDSLLNICPIGDVSMGEPQLLSEEYSRQQENPLVELVTCSGRGKNG
ALTVLQRTVRPQLITAFNLPGCIDMWSVFGESESTRENEGTHAYLILTQDDSSMVLQTGQ
EINEVDNSGFMTGSPTIFAGNLGNNKFMVQVTTTTIRLIKGGVQLQSIQLEWTAQYAAVA
DPYLCVTSSCGRAIVLALREIRGKDGQPSGRLAPTRQCVPARPPLVRAAPHRDLSGLFAP
DLAEPGHQVKGEFTGKLKENVKKEAFKPGVVYELNDEDEMLYGGDQTPASMASIMLAEQS
KNPGVPRRMSRWWKKYLQEVKPTYWLFCVRDNGNLEIYSLPEMRLSFLVRDSCAGNRILA
DSLESVPMSDSMEDEDISAPSHNADAEKLKELCVVGLGHKGSRVILMLRMQNELMIYQAY
KYPRGNLKLRFCRVTVSFPFGYESVPSTAQSADTYETAGVRDGVRQLRYFGNVGGYSGVF
VCGATPYMMFLSARGELRLHPLHADRPPVHTFAPFNNTNCPQGFLYFNAESSLRICALPS
HLSYDAAWAVRKVPIRMTPHYVTFHLESRTYCLVASTSQPTTVYYKFNGEDKEKSAENKG
DRFPYPMLDRFSVMLFSPVSWEIIPNTKIELDEWEHVTCLKNVSLSYEGTRSGLRGYIAI
GTNYNYSEDITSRGRIIIYDIIDVVPEPGQPLTKNRFKEIYSKEQKGPVTALTQVLGYLI
SAVGQKIYIWQLKDNDLVGVAFIDTQIYVHRMLAVKNLILVADVYKSISLLRYQPAHRTL
SLVSRDFRTAQIYDMEFMVDNTNLGFLVSEAEGNFALFMYQPQARESYGGQRLIRKSDYH
LGQQVHAMFRINVRSLPDSDNSHKRHVSMFTTLDGAIGYVLPVTEKMYRRLLMLQNVMNN
YYCHIAGLNPRAFRTYKASRRAAGGGAARGVLDGDLVALYAAMPRADQHDIAKKIGTKVE
EIMSDLYEIDRLTAHF
NT seq 4371 nt   +upstreamnt  +downstreamnt
atgttttcgatttgtcgaacgactcatccagcgacaggtatagagcacgcggttagctgt
tatttctttaacaatgacgaggtttgtctggtcaccgccggtgccaatatcatcaaggtc
ttcaggctgctgcccgaaggccacacaaaagagattaatgcagccggtcagccgattccc
ccgaagatgaagttggaatgtttagccacatatacattatggggtaatgtgatgtcttta
gcttctgtccgctgtcaaagttctggtcgagatatcctgttggtttcattcaaagaggct
aaattatctgtactccaatatgacccacagaccaataacttggttacattgagtatgcat
tattttgaagaggatgatatgaagggcggttggacaactcatcctcatataccatggatc
agagtagatcctgagttccgatgtgctgtgatgttgttgtatgggaagaaacttgcagtc
cttccgtttaggaaggacattacctctgaagaaggggatcctcttgaggccaaacccctc
tctgacacaaagaaaaatcaagcagctcatactatgaacagggcaccaacactggcctca
tacataataatactcaaggacctagatgagaagattgataacatattagacatacaattc
ttgcatggctattacgaacctacgttgctactgctctatgagcccgtcagaacatttcct
ggtcgcacggcggttcgcaacgacacctgcgcgatggcgggcgtcagtctgaacatgtca
gctcgggtgcacccggtcatctggtccacctcaggtctgcccttcgactgtctccaagcc
gtgcccgtgccgaaaccactaggtggctgtttgataatggccgtcaactcattgatatat
ttaaatcaatcggttccaccttacggcgtctcactgaacagtgttgctacacacaccaca
aattttcccctgaggatccaggagggcgtgtgcatgacgctggagggcgcgtgcgtggcg
cggctgtcggacgccgtgttcgcggtgtctctgcgcggcggccagctgtacgttgtggcg
ctgctggcggacagtgtgcgctccgtcagaagcttccacatcgaccgcgccgccgcctcc
gtgctcaccacctgcatgtgcgttatagaagaggacttcctattcctggggtcgcggctc
gggaactcgctgctgctgcgcgttaccgagcgagagaaccggatgttgttctccgttgac
aaacccctggaagcgacggtcgatctgaccgtggccgaaaccgaacgagagcagagcaga
gagaaggagcagcccgacccggcttcgaagcggcggcgcatggacaccatcagcgactgc
gtggcctccaacgtcatcgagatcagcgacggagacgagctcgaggtgtacggcagcgac
atacgcacgtccacaagactcaccagctacgtgttcgaggtatgcgattcgctgttaaac
atatgtccgatcggcgacgtgtctatgggtgagccccagcttctctccgaggagtacagc
agacagcaggagaatcctctggtggagctggtgacctgtagtggcagagggaagaacggc
gccctgaccgtactccagaggacggtcagacctcagttgatcactgctttcaatttaccc
ggttgtatcgacatgtggtcggttttcggagagagcgaaagcactagagaaaacgaagga
acgcacgcgtatttgatactgacgcaagacgactcctccatggtcctacaaaccggccag
gagatcaacgaggtggacaactctggcttcatgacgggctcgcccaccatcttcgctggg
aacctcgggaacaacaagttcatggtgcaggtcaccaccaccaccattcgactcatcaag
ggcggcgtgcagctgcagtcgatccagctggagtggacggctcagtacgcggccgtcgcg
gacccctacctgtgcgtcacgtccagctgcggccgcgccatcgtgctggccctgagagag
atcagggggaaggacgggcagccgtcgggtcggctggcgcccacgcggcagtgcgtcccc
gcgcggcccccgctcgtgcgcgccgccccgcaccgcgacctcagcggactgttcgcgcca
gacctcgccgagcccggccaccaggtcaaaggtgagttcaccggtaagttgaaggagaac
gtgaagaaggaggccttcaagcccggcgtggtctatgagctgaacgacgaagatgagatg
ctgtacggaggcgaccagacgcccgcatccatggccagcataatgctggcggagcaaagc
aagaatccaggggttccgcgtcggatgtcgcgctggtggaagaagtacctccaggaggtg
aagcccacgtactggctgttctgcgttcgcgacaacggcaacctggagatatactcgttg
ccggaaatgaggttgagtttcctggtgagagactcgtgcgctggaaacaggatattggcg
gacagcctggagtccgtcccgatgtcagacagcatggaggacgaggacatcagcgcgccg
tcacacaacgctgatgctgagaagctcaaggaactgtgcgtcgtcggtctggggcacaag
ggctccagggtgatactgatgctgaggatgcaaaatgaattgatgatttatcaggcgtac
aaatacccccgggggaatctcaagctgcggttctgccgggtgactgtctcgttcccgttt
gggtacgagagcgtgcccagcaccgcacagagcgccgacacctacgagacggccggcgtg
cgggacggcgtgcggcagctgcggtactttggcaacgtgggcgggtacagcggggtgttc
gtctgcggcgcgaccccctacatgatgttcttgtctgcgcgcggcgagctgcgcctgcac
ccgctgcacgccgaccgaccgcccgtgcacacgttcgcgcccttcaacaacaccaactgt
ccgcagggcttcctgtacttcaacgccgagtcgtcgctccgcatctgcgcgctgccgtcg
cacctgtcgtacgacgcggcgtgggcggtgcgcaaggtgcccatccgcatgacgccacac
tacgtcacgttccacctggagtccaggacctactgcctcgtcgcctccacctcgcagccc
accacggtctactacaagttcaacggcgaggacaaggagaagtctgccgagaacaaaggg
gacaggtttccgtacccgatgctggaccgcttctcggtgatgctgttctcccccgtctcc
tgggagatcataccgaacaccaagatcgagctggacgagtgggagcacgtgacgtgtctc
aagaacgtgtcgctgtcgtatgaaggaaccagatccggtctccgcggttacatagcgata
ggaactaattataattacagcgaggatatcacttctagggggaggataataatctacgac
ataatcgacgtggtcccggagcccgggcagccgctgaccaagaaccgcttcaaggagatc
tactccaaggagcagaagggtccggtgaccgcgctcacgcaggtgctcggctacctcata
tccgccgtcggacagaagatatacatatggcagttgaaagacaacgacctagtgggcgtc
gcgttcatcgacacccagatatacgtgcaccgcatgctggccgtcaagaacctcatcctg
gtggccgacgtctacaagtccatctcgctgctgcgctaccagcccgcgcacaggacgctc
tcgctggtctccagggacttcaggaccgcgcagatatacgatatggagttcatggtggat
aatacgaacctcggtttcctggtcagcgaagccgaggggaacttcgcgctgttcatgtac
cagccgcaggccagggagagctacggaggccagcggctgatacgcaagagcgactaccac
ctgggccagcaggtgcacgccatgttccgcatcaacgtgcgctcgctgccagactccgac
aactcgcacaagagacacgtcagcatgttcacgaccctggacggcgccataggctacgtg
ctgccggtcacggagaagatgtaccggcgcctgctgatgttgcagaacgtcatgaacaac
tactactgccacatagccggcctcaacccgagggcctttcgcacgtacaaggcgtcgcgg
cgcgcggcggggggcggggcggcgcggggcgtgctggacggggacctggtggcgctgtac
gccgccatgccgcgcgccgaccagcacgacatcgcaaagaaaatcggtacaaaagtcgag
gagataatgtcggacttgtacgagatagacagactgaccgcgcatttttag

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