KEGG   Brassica oleracea (wild cabbage): 106328963
Entry
106328963         CDS       T04124                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    106328963
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:boe03400]
    106328963
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     106328963
SSDB
Motif
Pfam: Tyr-DNA_phospho FHA FHA_2
Other DBs
NCBI-GeneID: 106328963
NCBI-ProteinID: XP_013622975
UniProt: A0A0D3B181
Position
C3:complement(3528171..3531318)
AA seq 616 aa
MTLSQVAYLIPLKPDLKEDNSSPRITLSEGQNTIGRLNVSTTDKRLSRKHITITTSTSGS
ASLSVEGTNPVVVRSSGERKKVNPRGEVSLVNDDLIELIPGHHFFKLVLLPRESERGSHE
RAAKKARKEGDGSDDVEAIRRFCPASEKLHSTFRLLSVDGLPDWANTSCVSINDVVEGDV
VAAILSNYMVDLDWLLSACPKLVNIPQVMVIHGEGDARQEYIQRKKPANWILHKPRLPIS
FGTHHSKAIFLVYPRGVRVVVHTANLIHVDWNNKSQGLWMQDFPFKDDDDDKDSTKSCGF
EDDLVDYLAVLKWPEFTASLPGLGNVKINAAFFRKFDYSNATVRLVASVPGYHTGSNMRK
WGHMKLRTILQECVFDREFRRSPLVYQFSSLGSLDEKWLAEFGASLSSGITEDRTPLGHG
DPLIIWPTVEDVRCSLEGYAAGNAIPSPLKNVEKPFLKKYWAKWKADHSARSRAMPHIKT
FTRYSDQKLAWFLLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPSPVKTQGCSFSCT
DNNSSTKKVKQETKGEVEKRSKLVTMTWQGNRDSPEIISLPVPYQLPPKPYSSEDVPWSW
DRGYSKKDVYGQVWPR
NT seq 1851 nt   +upstreamnt  +downstreamnt
atgactctctctcaggtagcgtatctgattccgctcaaaccagacctaaaggaagacaat
tcatccccgaggataaccttatccgaaggccagaacaccatcggacgcctcaacgtttca
accaccgataagcgtctcagccgcaagcacatcaccatcacaacttccacctccggctca
gcctccttatccgtggaaggaacgaaccctgtggttgttagatcttccggagagaggaag
aaagtaaatccacgtggagaggtttcgttagttaacgatgatcttatcgaattgatccct
ggtcatcatttcttcaagctagtgttgttgccacgagagagtgagagaggaagtcatgaa
agagctgctaagaaagctcgaaaggaaggagatggtagtgatgacgtggaggcgattcga
cgtttttgtccagctagtgagaagctgcattcaacgtttcggcttttgagtgttgatggt
ttgcctgattgggctaacacttcttgtgtttcgattaatgatgtcgttgagggagacgtt
gttgctgcaattttatcgaattatatggtggatctagactggttgttgtcagcttgcccg
aaactggtgaacattcctcaggttatggttattcatggagaaggtgatgctaggcaagag
tacattcagaggaagaagccagctaattggattcttcataagcctcgtttacctatttcg
tttgggacacatcactccaaggctatcttccttgtctatcctcgaggagtgagagttgtg
gtacacacagcgaatctgatccacgttgattggaacaacaaaagccaaggcttgtggatg
caagatttcccttttaaagatgatgatgatgataaagattcaactaaaagttgcggattc
gaagatgatcttgtcgattacctcgctgttcttaagtggcctgagtttactgcaagcttg
cctggtcttggtaatgtcaagatcaatgcagccttcttcagaaagtttgattattccaat
gctacggttagactagttgcatcagtccctgggtaccacactggttccaacatgagaaaa
tggggacacatgaagctaaggacgattcttcaagaatgcgtttttgatagggagttccgc
agatccccattagtttatcagttttcttcactcggttctttggacgagaagtggttggct
gagtttggagcttctttgtcttctggtataacagaggacagaactcctctcggtcatggg
gatcctttgattatatggcctacagtagaagacgtcaggtgttctttagagggttatgct
gctggcaatgcaattccgagcccattgaagaatgtggagaaaccattcttgaaaaagtat
tgggcaaaatggaaagctgatcatagtgctcgcagtcgtgcaatgccacatataaagaca
ttcacgcgttacagcgaccagaagcttgcatggttcttgctaacctcatcgaatcttagc
aaagcggcctggggagcacttcagaagaacaactctcagttgatgatccgttcctatgag
ttgggagtcttgttcttaccatctccagtgaaaacacaaggttgtagcttttcatgcacc
gacaacaactcgagtactaagaaggtaaaacaagagacgaaaggtgaggtggagaagagg
agtaagctagtgacgatgacatggcaaggaaacagagattcgcctgagataatctcactc
ccagttccttatcaactacctcctaagccatactcatctgaagatgttccatggtcatgg
gaccgagggtactcgaagaaggatgtgtatggacaagtctggccaagatag

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (9)   

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