KEGG   Brachybacterium sp. NBEC-018: NLU66_13285
Entry
NLU66_13285       CDS       T08499                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
brha  Brachybacterium sp. NBEC-018
Pathway
brha03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:brha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    NLU66_13285 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brha03400]
    NLU66_13285 (mfd)
Enzymes [BR:brha01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NLU66_13285 (mfd)
DNA repair and recombination proteins [BR:brha03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      NLU66_13285 (mfd)
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID Cas3-like_C_2 ResIII AAA_19 AAA_30 RecG_dom3_C UB2H PBP_like_2 IstB_IS21
Other DBs
NCBI-ProteinID: UVY83178
Position
complement(2935942..2939514)
AA seq 1190 aa
MTPTAPLAPLLDLIADGRDLTAIRELVASGTADGSGGDMVAATGLFPFAVADLARASSAE
SPLVVVTPTTRAAEDLRSALGALVGTEHLAELPAWETLPHERLSPRADTVARRLATLRRI
AHPETERPVHVLLMPVRSLLQPIAAGLGDLRPVRAAVGDTYALEDLEQDLVDAAYARVDM
VEKRGEFAVRGGILDVFPPTEPHPVRVDLFGDEVEDVRYFSVADQRSLDPAPHGLDAPPC
REILLTPAVRERARVMAEDLPGVAEMLQRIAAGIAVDGMESLSAVLVEEMQQVADVLPAG
ARFLLMDPEKIRARAAELVATTDEFLAAAWSSAAAGGGLPIDVGAASFVPLSEAKGHARA
GGRPWFTLAAFGLETDVDLTATTAATHPGYSGKPGDAAQDLERRRQDGWRIIATLAGQGS
ARHASENLRAEGLPAVYADHLEGPVAEGEAVVTVGPFPEGLVDEDAKVLLASERDLTGKS
GARRGEERRMPSRRRNVVDPLQLRPGDFVVHSHHGVGRFVEMTSRTVGAGAKATTREYLV
IEYSASKKGQPGDRLYVPSDQLDQVTKYVGGEEPSVNRMGGADWAKTKSRARKAIREIAD
ELVRLYSARQSAPGHAFAPDTPWQRELEDAFEFIETPDQLSALDDVKGDMEKSVPMDRLI
LGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLAQQHLDTFTERYTGFPVTVKGLSRF
QSAADSQATIDGLLDGSVDVVIGTHRLLTGQVRFKDLGLLIIDEEQRFGVEHKETLKALR
TDVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGAQEDKQVTAAIRREL
LREGQVFYVHNRVEDIDRVAAHLRELVPDARVQVAHGKMNEHQLERVILDFWEREFDVLV
CTTIVETGLDIANANTLIVENADRFGLSQLHQLRGRVGRSSERAYAYFLYNATKPLTETA
HDRLTTLATNTDLGAGMRVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVAAF
RGESTAPEKEIRVELPVDAHLPHDYIPSERLRLEAYSKLSAVREVAEIEQVAAELVDRYG
PLPEPVSLLLDVARFRIDARAAGIDEVQAQGKMIRFAHVEPADSVAMRMKRLFPGTMLKP
AVRQVLVPRPTTARFGGTELRDHALLDWAREVMRTLVPAAAEQISRSDGE
NT seq 3573 nt   +upstreamnt  +downstreamnt
atgacccccaccgccccgctcgccccgctgctcgacctgatcgccgacgggcgcgacctc
accgcgatccgcgagctcgtcgcctccgggacggccgacggcagcggcggcgacatggtc
gcggcgaccgggctgttccccttcgcggtcgcggacctcgcgcgcgcctccagcgccgag
agcccgctcgtcgtcgtcaccccgacgacgcgcgccgccgaggacctccgctctgcgctc
ggcgccctcgtgggcaccgagcacctcgccgagctccccgcctgggagacccttccccat
gagcggctctccccgcgcgcggacaccgtcgcccggcgtctcgcgacgctgcggcggatc
gcgcaccccgagaccgagcgtcccgtgcacgtgctgctcatgcccgtgcgctcgctgctc
cagccgatcgccgcgggcctcggcgacctccggccggtccgcgccgcggtgggggacacc
tatgccctcgaggacctcgagcaggacctcgtcgacgccgcctatgcgcgcgtggacatg
gtggagaagcggggggagttcgccgtgcgcggcggcatcctcgacgtcttcccgcccacc
gagccgcacccggtgcgcgtggacctcttcggcgacgaggtggaggacgtccgctacttc
tccgtcgccgaccagcgctccctggacccggccccgcacggcctcgacgccccgccctgc
cgggagatcctgctgaccccggccgtgcgcgagcgcgcccgggtgatggcggaggacctc
cccggcgtcgccgagatgctccagcgcatcgccgcgggcatcgccgtggacggcatggag
tccctcagcgccgtgctcgtcgaggagatgcagcaggtggcggatgtcctccccgccggc
gcgcgcttcctgctcatggaccccgagaagatccgcgcccgtgccgcggagctcgtcgcg
acgacggacgagttcctcgcggcggcctggtcgagcgccgccgccggcggcgggctgccg
atcgacgtgggcgccgcgagcttcgtcccgctctccgaggcgaagggccacgcccgtgcg
ggcggccggccctggttcacgctcgccgccttcgggctcgagacggacgtcgacctcacg
gccacgaccgcggccacgcaccccggctactcggggaagcccggggacgccgcccaggac
ctcgagcgccgccgccaggacggctggcgcatcatcgcgacgctcgccggccagggctcc
gcccgccacgcgagcgagaacctgcgcgcggagggcctccccgccgtctacgcggaccac
ctcgagggcccggtcgccgagggcgaggccgtggtcaccgtcggcccgttccccgagggg
ctcgtcgacgaggacgcgaaggtcctgctcgcctccgagcgcgacctcacgggcaagtcc
ggcgcccgccgcggcgaggagcggcgcatgccctcgcgccgccgcaacgtggtggacccg
ctgcagctgcggcccggcgacttcgtcgtgcactcccatcacggcgtgggccggttcgtc
gagatgacgagccgcaccgtgggcgccggggcgaaggccacgacccgcgagtacctcgtc
atcgagtactcggcctcgaagaagggccagcccggcgaccgcctctacgtcccgagcgac
cagctcgaccaggtcacgaagtacgtcggcggggaggagccgagcgtcaaccgcatgggc
ggcgcggactgggccaagacgaagtcccgcgcccgcaaggcgatccgggagatcgcggac
gagctcgtgcgcctgtactcggcgcggcagtccgcgcccggccacgccttcgccccggac
acgccctggcagcgggagctcgaggacgccttcgagttcatcgagaccccggaccagctc
tccgccctcgacgacgtcaagggggacatggagaagtcggtgccgatggaccggctcatc
ctcggcgacgtcggctacgggaagacggagatcgccgtgcgcgcggccttcaaggccgtg
caggacggcaagcaggtcgccgtgctcgcgcccacgaccctgctcgcccagcagcacctc
gacaccttcaccgagcggtacacgggcttccccgtgaccgtgaagggcctcagccgcttc
cagtccgcggcggactcgcaggcgacgatcgacggtctgctcgacggctccgtcgacgtc
gtcatcggcacccatcgcctgctcaccgggcaggtgcgcttcaaggacctcgggctgctc
atcatcgacgaggagcagcgcttcggcgtcgagcacaaggagacgctcaaggcgctgcgg
accgacgtcgacgtgctcgccatgtcggccacaccgatcccgcgcacgctcgagatggcc
gtcacgggcatccgcgagatgtcgaccctcgcgacgccgccggaggagcgccacccggtg
ctcacctacgtcggcgcccaggaggacaagcaggtcaccgccgcgatccggcgcgagctg
ctgcgcgagggccaggtgttctacgtgcacaaccgggtcgaggacatcgaccgcgtcgcc
gcgcacctgcgcgagctggtccccgacgcccgggtccaggtcgcccacggcaagatgaac
gagcaccagctcgagcgggtcatcctcgacttctgggagcgggagttcgacgtcctcgtc
tgcaccacgatcgtggagacgggcctggacatcgcgaacgcgaacacgctcatcgtggag
aacgcggaccgcttcggcctctcgcagctgcaccagctgcggggccgcgtgggccgctcg
agcgagcgcgcctacgcctacttcctctacaacgccacgaagccgctcaccgagacggcc
cacgaccggctcacgaccctcgcgacgaacaccgacctcggcgcgggcatgcgggtcgcg
atgaaggacctcgagatccgcggcgcgggcaacctgctgggcggcgagcagtccggccac
atcgccggggtgggcttcgacctctacgtgcggatggtgggggaggccgtcgcggccttc
cgcggcgagtcgaccgcgccggagaaggagatccgcgtcgagctccccgtggacgcgcac
ctcccgcacgactacatcccctcggagcggctgcggctcgaggcctactcgaagctctcg
gccgtgcgcgaggtcgccgagatcgagcaggtcgcggcggagctcgtggaccgctacggc
ccgctgccggagccggtgtccctgctcctggacgtcgcgaggttccggatcgacgcccgc
gcggccggcatcgacgaggtgcaggcccagggcaagatgatccgcttcgcgcacgtcgag
cccgcggactcggtcgcgatgcgcatgaagcggctgttccccgggacgatgctcaagccg
gccgtgcggcaggtgctcgtgccgcggccgacgaccgcgcgcttcggcggcaccgagctg
cgcgaccatgcgctgctggactgggcgcgcgaggtcatgcgcaccctcgtgccggccgcc
gccgagcagatctcgcggtccgacggcgagtga

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (13)   
   Pfam (13)   
All databases (14)   

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