KEGG   Brassica rapa (field mustard): 103853050
Entry
103853050         CDS       T03449                                 
Name
(RefSeq) sm-like protein LSM3B
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03018  RNA degradation
brp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103853050
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103853050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103853050
   03041 Spliceosome [BR:brp03041]
    103853050
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103853050
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103853050
Spliceosome [BR:brp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103853050
 Complex C
  U2 snRNP components
    103853050
SSDB
Motif
Pfam: LSM TIG_SUH
Other DBs
NCBI-GeneID: 103853050
NCBI-ProteinID: XP_009128202
UniProt: A0A3P6AB14
Position
A02:complement(13935807..13936862)
AA seq 97 aa
MSGEEDATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVE
IDDETYEEIVRTTKRNIQFLFVRGDGVILVSPPLRAP
NT seq 294 nt   +upstreamnt  +downstreamnt
atgtccggcgaggaagacgccaccgtgagggagccgctagatctgattcgtctgagtctc
gacgagagaatctatgtcaagctccgctcagaccgcgagcttcgtggcaagcttcacgcg
tttgatcagcatttgaatatgattctgggcgatgttgaagaagttatcacaacagttgag
attgatgatgagacatatgaagagattgtccggacgacaaagcgcaacattcagtttctg
tttgtgagaggagatggagttatattggtgtctccaccactcagggcaccctaa

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (8)   

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