KEGG   Brassica rapa (field mustard): 103856400
Entry
103856400         CDS       T03449                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A isoform X2
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03020  RNA polymerase
brp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103856400
  09124 Replication and repair
   03420 Nucleotide excision repair
    103856400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:brp03021]
    103856400
   03400 DNA repair and recombination proteins [BR:brp03400]
    103856400
Transcription machinery [BR:brp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     103856400
  RNA polymerase III system
   RNA polymerase III
     103856400
  RNA polymerase I system
   RNA polymerase I
     103856400
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103856400
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-GeneID: 103856400
NCBI-ProteinID: XP_009131757
Position
A03:3981219..3983384
AA seq 212 aa
MCENMSLSEEEIRMLFRVNKTLNHMLKDRGYIVTDAELEMTQEQFIDQYGENMERKDLVI
LKTKKNDESDKIFVFFLQETKVKMVGIKACFERMVAQNVFRAILVVRKDMNRFALSAVTD
ANSKRILYLESFKETELLMNVKEHAFVPEHIALTTEEKKALLEKYTVQENQLPRIQYTDP
IAKYYGLKRGEVVKIIRNSETSGRYVTYRFVI
NT seq 639 nt   +upstreamnt  +downstreamnt
atgtgtgaaaatatgagtttatccgaagaagaaatcagaatgcttttcagagtcaacaag
acacttaaccatatgctcaaagatcgtgggtacattgtcacggatgctgaacttgagatg
acacaagaacagtttatcgaccaatacggcgagaacatggaaagaaaagatcttgttatt
ctcaagactaagaagaacgatgaatctgataagatctttgtcttttttctacaagaaaca
aaagttaaaatggtcggcatcaaggcttgctttgagcgcatggtagctcagaacgtcttc
agagcaattcttgttgtgaggaaggatatgaatcgcttcgctctctctgctgtaaccgac
gcaaactcaaaacgaatactttacttggaaagttttaaggagacagagcttctaatgaac
gtgaaggaacacgcttttgttccggagcatatagctctgacaactgaggagaaaaaagct
ttgttggagaagtacactgtgcaagagaatcagcttccacgtattcagtatacggaccct
atagcgaaatactatgggctaaaacgtggagaagtcgtgaaaatcatacgcaacagtgaa
acatctggtcgttatgtcacataccgctttgttatatga

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