KEGG   Bacillus subtilis subsp. subtilis 168: BSU20350
Entry
BSU20350          CDS       T00010                                 

Symbol
yorK
Name
(RefSeq) single-strand DNA-specific exonuclease YorK
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bsu  Bacillus subtilis subsp. subtilis 168
Pathway
bsu03410  Base excision repair
bsu03430  Mismatch repair
bsu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bsu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    BSU20350 (yorK)
   03430 Mismatch repair
    BSU20350 (yorK)
   03440 Homologous recombination
    BSU20350 (yorK)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsu03400]
    BSU20350 (yorK)
Enzymes [BR:bsu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.-  Acting on ester bonds
    3.1.-.-  
     BSU20350 (yorK)
DNA repair and recombination proteins [BR:bsu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     BSU20350 (yorK)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     BSU20350 (yorK)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BSU20350 (yorK)
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1 DUF5802
Other DBs
NCBI-GeneID: 939545
NCBI-ProteinID: NP_389917
Pasteur: BG13695
BSORF: BG13695
UniProt: O31903 A0A6M3ZHZ7
Position
complement(2179526..2181256)
AA seq 576 aa
MEYRLIGDNDYNFDPLATILKNRGIEDPKLFVNVDQSSVIHYSKLNNIDKAADCLIRHLN
NKNKLFVQVDSDVDGYTSSSIIINYIKKICPKANIHYRIQDGKEHGIFIDTIPDDVDLVI
IPDAGSSQFEEHEALNKRGTEIIVIDHHECERVSEHAIVVNNQLSPNYSNKTLTGAGMAY
KFCQAIDEKLNKNEAEQFLDLVSIGNIADSADSRNLETRYFMNEGLKKIKHPLLKKLFKK
QEFSTKGDKSIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEKVPYKKRGQSETEL
VSIHEDTVRILGNLKAKQKRIVDAAGVEIKNRIEEKSLTANKVLIVYIEGILDKSLTGLV
ANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKDFKKELIDTGLFEFVEGHPNA
AGFAIKRQNLILVNKVLNEKFKDINIEEDIQNVDFEIPAKRLRKEFILQLDGYKDYWGYK
VEEPLIAITDLEIEVEQIEHLGKKNKTTVKFKHGDIEYIRFKSDENYFNQLTASNGTLVI
NVIGKAKANEYKGKKTPQIEIYELEVVRTKQKELVF
NT seq 1731 nt   +upstreamnt  +downstreamnt
atggagtatagactaattggcgacaatgattataatttcgatcctttagctactatctta
aaaaatagaggcatagaagatccaaagttgtttgttaatgttgatcaaagttcagttatt
cattattcaaagcttaataatattgataaagctgcagattgtcttatcaggcatttaaat
aataaaaataaattgtttgttcaggtagacagtgatgttgatggatacacatccagctca
atcattataaattacataaagaagatttgtccgaaagctaatatacactacagaattcaa
gatgggaaagagcatgggatttttattgatacaattcctgatgatgttgacttagtcata
atcccagatgcaggttcaagtcaatttgaggaacatgaggctcttaataagagaggcaca
gaaataattgttattgatcaccatgaatgtgaacgagtgtctgaacatgcgatcgtagta
aataatcaactttcgcctaattattcgaataaaactctgacaggtgcaggaatggcctat
aaattttgccaggcaattgatgaaaagctaaataaaaatgaagccgaacaattcttagac
cttgtatctattggtaacattgctgattcggctgattcaagaaaccttgaaaccaggtat
tttatgaatgaaggcttgaagaaaataaaacatccattattaaagaagctgtttaagaag
caagagttttcaaccaagggtgacaagagcatacagaatacacagttctttattaaccct
ttaattaacgctgccattagggttggaagcagtgaagaaaaagatcaaatgatgagagca
ttcctcctttctaaagaaaaggttccctacaaaaaacgtgggcaaagtgaaactgagctt
gtatcaatacatgaagacacagttaggattctaggaaatctaaaagcaaagcagaaacgg
attgtagatgcagctggagtggaaattaaaaatagaatagaagagaaaagtttaacagcg
aataaagtactcattgtttacattgaaggaattctagataaaagcctaactggactggtg
gccaatcagcttgcagaagaatataaaaagccggtcttgttagccagaaacgatcccgaa
aaaggtaaagatatcttgagtggctctatacgaggatatgataaagggtttataaaggat
tttaagaaagagcttatagatactggattatttgagtttgttgaaggtcacccaaatgca
gcgggctttgcaattaaacgacagaacttaatcctggtgaacaaagtgctgaatgaaaaa
tttaaagacataaatatcgaagaagatattcagaatgttgattttgagatcccagcaaaa
cgattgagaaaagaatttatccttcaacttgatggttacaaagactattggggttacaaa
gttgaagaacccttaatagctataacggatcttgaaattgaagtcgaacaaattgagcat
ttagggaaaaagaataagacaactgttaaatttaagcatggcgatattgaatacataagg
tttaaaagtgatgagaattactttaatcagcttactgcatcaaatggaacgttagtcatt
aatgtaattggcaaagcaaaggcaaatgaatacaaaggcaagaaaacacctcaaatcgag
atttatgaattggaggtggttcgcacaaaacaaaaagaacttgtgttttaa

KEGG   Bacillus subtilis subsp. subtilis 168: BSU27620
Entry
BSU27620          CDS       T00010                                 

Symbol
recJ
Name
(RefSeq) single-stranded-dna-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bsu  Bacillus subtilis subsp. subtilis 168
Pathway
bsu03410  Base excision repair
bsu03430  Mismatch repair
bsu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bsu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    BSU27620 (recJ)
   03430 Mismatch repair
    BSU27620 (recJ)
   03440 Homologous recombination
    BSU27620 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsu03400]
    BSU27620 (recJ)
Enzymes [BR:bsu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.-  Acting on ester bonds
    3.1.-.-  
     BSU27620 (recJ)
DNA repair and recombination proteins [BR:bsu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     BSU27620 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     BSU27620 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BSU27620 (recJ)
SSDB
Motif
Pfam: ssDNA-exonuc_C RecJ_OB DHHA1 DHH tRNA_anti-codon PGM_PMM_II
Other DBs
NCBI-GeneID: 937538
NCBI-ProteinID: NP_390640
Pasteur: BG13804
BSORF: BG13804
UniProt: O32044 A0A6M3ZEJ8
Position
complement(2823419..2825779)
AA seq 786 aa
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFYDP
FEMKGMKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFK
EGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPDVR
AIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLM
SEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQTAIVVAKAGWNPGVVGI
VASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFESLSECRDILPHFGGHPMAAGM
TLKAEDVPDLRSRLNEIADNTLTEEDFIPVQEVDLVCGVEDITVESIAEMNMLSPFGMLN
PKPHVLVENAVLEDVRKIGANKTHVKMTIRNESSQLDCVGFNKGELQEGIVPGSRISIVG
EMSINEWNNRKKPQLMIKDAAVSEWQLFDLRGKRTWEDTVSALPSAKRAIVSFKEDSTTL
LQTEDLRREVHVISSKDQAKAFDLDGAYIVLLDPPPSLDMLARLLEGKAPERIYFIFLNH
EDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELAKHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGAKKRDLTDSQTYQAKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAY
ESTRRT
NT seq 2361 nt   +upstreamnt  +downstreamnt
atgttagcgtcaaaaatgcgatgggaaatccagcgaccagatcaggataaggtcaaatca
ctcacagaacaattgcatataacacctcttgttgcgtccctgcttgtaaaaagaggcttt
gatacggcagaaagcgctaggctgtttttacatacaaaggatgccgatttttatgatcct
tttgaaatgaaaggcatgaaagaagcggcagatcgaataaaacaggcgatttcacaacaa
gaaaagattatgatatatggcgattatgacgccgatggggttacaagtacgtcagtgatg
cttcacacgctgcaaaaactgtcggctcaagttgatttttatatacctgaccgttttaaa
gaaggatatggacctaatgaacaggcgtttcgttcgattaaagaacggggcttctctttg
atcattacggttgatacaggaattgccgctgtgcatgaagcgaaggtggcaaaggaactc
ggactggatgtcatcattaccgatcatcatgaaccgggaccggagcttccggatgtccgt
gcgatcgtccacccgaagcagcctggctgcacttacccgtttaaagagcttgccggggtt
ggagtcgcgtttaagcttgcccacgctttattgggtgaacttcctgatgaactgcttgac
ctggcggctatcggcaccattgccgatctagtcccgctgcatgacgaaaacagattaata
gcaacactaggacttgaaaggcttcgacggacaaatcggctcggcttaaaagagctgatt
aagctgtcaggcggagacatcggagaagcgaacgaagaaacagtcggatttcagctcgca
ccaaggctgaatgccgtcggaagaatcgaacaggcggatcccgctgttcatttgcttatg
tcagaggattcgtttgaagcggaagagcttgccgcagaaattgaccagctgaacaaagag
cgccaaaaaatggtcagcaaaatgacggatgaagcgattgaaatggttgaacagcaaggg
ctcgatcaaactgcaattgtcgtggccaaagccggatggaacccgggagtcgtcgggatt
gtggcttcaaagcttgtggaccgtttctaccgaccggccattgttcttggtattgatgaa
gaaaagggaatcgctaaaggttcggcccgaagcatcagaggatttaatttatttgagagc
ctttctgaatgcagagatattcttcctcatttcggcggccatccaatggctgcggggatg
acgctgaaagccgaagatgtgccggatttgcgaagcaggctgaatgaaatagcggacaat
acgcttacggaagaggattttattcccgtacaggaagtcgaccttgtctgcggcgtcgaa
gacattacagttgaaagcatcgcagaaatgaacatgctgtctccttttggcatgctgaac
ccgaaaccgcacgttctcgtagaaaatgcagtactggaagatgtccgcaagataggggca
aataaaactcatgtcaaaatgacgatcagaaacgagtcgtcccagcttgattgcgtcggt
tttaataaaggcgagcttcaagaaggcatcgtaccgggttcaagaatttccattgtcggt
gagatgtcaatcaacgaatggaacaatcgaaaaaagccgcagcttatgataaaggatgcc
gctgtttctgaatggcagctgtttgatttaaggggaaaacggacgtgggaagacacagtt
tccgcccttccatctgctaaacgggccattgtctctttcaaagaagactcaacaacatta
cttcaaactgaagaccttcgccgagaagtgcacgtcatcagttctaaagatcaagcaaag
gcgtttgacctcgatggtgcatatattgtattactggatccgccgccttcgctggacatg
ctcgcacgtttgctggaaggaaaggcgcccgagcggatatattttatttttctcaatcat
gaggaccactttttatcaacttttcccgcaagagaccactttaaatggtattatgcgttc
ttgctgaaaagaggcgcttttgacgtgaaaaaacacggttcagagcttgcaaaacataaa
ggctggtccgttgaaacaatcaatttcatgacaaaggtgttttttgatctcggttttgtt
aaaatagagaatggtgtgctgtctgttgtgagcggagcaaagaaacgcgacttaacagac
tcacaaacatatcaggcgaaacagcagctgatggaactggatcaaaagctgaattattct
tctgctgaagagctgaaggaatggctgaataagctgatgaaacaagattcagaggcttat
gaaagtacgaggaggacataa

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