KEGG   Capsicum annuum (peppers): 107879460
Entry
107879460         CDS       T04646                                 
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22 homolog
  KO
K13100  pre-mRNA-splicing factor CWC22
Organism
cann  Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:cann00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cann03041]
    107879460
Spliceosome [BR:cann03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    107879460
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    107879460
SSDB
Motif
Pfam: MA3 MIF4G HEAT_5MP1_2 HEAT_Nup120
Other DBs
NCBI-GeneID: 107879460
NCBI-ProteinID: XP_016581979
Position
8:complement(163536396..163538170)
AA seq 539 aa
MEIYSIRKERQRGNTVSEYERMSWDALRKSINGFMNKVNAINIKNTVPELFGENLIRGRG
LFCRSIMKSQMASPIFTDVFAALVAVVNSKIPVIGDLLLRRLILQLNKPANKLQLLASLK
FVAHLVNQQVVHELIALQLLTVXLEIPNDDSVEVAVSFVTECGSILQDLCPSGLYAIFER
FRGILHEGEIDKRIQFLIENLFALRKAKFQGYPAVRPELDLVEEEDQLTHEISLSDELDS
XIALDVFKQDPDFAENEKKYEELKKKILGEESEKEGDADAESDEEEDEEKKEIKDESETN
LINFRRTVYQTIMSSVDFEEAGHKLLKIKIEPGHAMELCIMLLECCSQERTFLRYYGYLG
QRFCMIDKVYQENFDKCFVQQYSMVHRLETNKLHSVAKLFAPLLATDALPXHVLAYILLT
EDDTTSSSRIFIKILFQELAEHLGIHLLNERLNDPMMQDSFESIFPKDNSKNMRFAINFF
TSIGLGGITENLRVYSKNTSRLIMKKQKPVSLVPESESESSDSERDDHRRKKRRRTWGF
NT seq 1620 nt   +upstreamnt  +downstreamnt
atggagatatattctattagaaaagagaggcagagaggaaatacagtgtctgaatacgag
aggatgagttgggatgctcttcgtaagagtatcaatggattcatgaataaggttaacgcc
atcaacattaagaacactgtccctgaactgttcggggaaaatttgattcgagggagagga
ttgttctgcagatcgatcatgaaatcacaaatggcttctccaatattcactgacgtgttt
gcagcgctagttgccgttgtgaacagcaaaataccggtaataggagatcttttgttgaga
agattgatacttcaactgaataaacctgctaataagcttcagttgttagcatccctcaag
tttgtcgctcatcttgtgaatcagcaagtcgtgcacgagcttattgcgctccagttactt
actgttnatctggagatacctaatgatgatagtgttgaggttgcagttagttttgttacg
gaatgtggttcgattcttcaggatctatgtccttcagggctgtatgctatttttgagagg
tttcgagggatacttcatgaaggagaaattgataaaaggattcaattcttaattgaaaac
ctttttgcgttgagaaaggcaaagtttcagggatatcctgctgttcgtcctgaactcgac
ctagttgaggaggaagatcaattaacccatgaaatctctctttcagatgagttagattct
taaattgctttggacgttttcaagcaggatcccgattttgcagaaaacgaaaagaagtat
gaagaattaaagaaaaagatactaggtgaagaatctgagaaagaaggagatgctgatgca
gaatctgatgaagaagaggacgaggagaaaaaggaaataaaagacgagagcgagacaaac
ttgatcaattttcgaaggacagtctaccagacgattatgtcaagtgttgattttgaggaa
gcagggcataaactgttgaaaattaaaatagaacctggtcatgcgatggaattatgcatt
atgttattggagtgctgcagtcaggagaggacttttctccgttactatggatatttgggt
cagcggttttgcatgatcgacaaggtttaccaggagaactttgataaatgctttgtgcag
cagtactccatggtccaccgtctcgaaactaataagctgcacagtgtggctaagcttttc
gctcctttgctcgccactgatgcactgcctntgcatgttttggcatatatactgctgaca
gaagacgacactacatcctcttcccgaatatttatcaaaatcctgtttcaggagttggca
gagcaccttggcatccatttgttgaatgagcgtcttaatgatccgatgatgcaagactcg
tttgagtcaatatttccaaaggataattcaaaaaatatgaggtttgcaatcaacttcttc
acttccattggtctaggtgggataactgaaaatctgcgagtgtattcaaagaacacgtca
aggcttatcatgaaaaagcaaaagcctgtctcgttagtgcctgagtcagaatctgaaagt
agtgacagtgaaagagacgatcatcgaaggaagaaaaggagaagaacttggggcttttag

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (9)   

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