KEGG   Citrobacter arsenatis: E1B03_21210
Entry
E1B03_21210       CDS       T07503                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
cars  Citrobacter arsenatis
Brite
KEGG Orthology (KO) [BR:cars00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cars03009]
    E1B03_21210 (rlmD)
Enzymes [BR:cars01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     E1B03_21210 (rlmD)
Ribosome biogenesis [BR:cars03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    E1B03_21210 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRAM Methyltransf_31 Methyltransf_25 PCMT RrnaAD Methyltransf_11 TRM5-TYW2_MTfase MTS Cons_hypoth95 Methyltransf_23 FtsJ Methyltransf_4 Methyltr_RsmB-F Ubie_methyltran Methyltransf_15 TPMT PrmA Methyltrans_SAM CMAS
Other DBs
NCBI-ProteinID: QBM24815
UniProt: A0A4P6WSF8
Position
complement(4200641..4201939)
AA seq 432 aa
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPELLPQESAEVVITEDKKQ
FARAQVKRRLNDNPQREVPRCPHFGVCGGCQQQHASISLQQRSKSAALSRLMKCEVSDVI
ADTPWGYRRRARLSLNYRPKEQKLQMGFRKSGSSDIIDVKQCPILVPQLEALLPHIRACL
ESLQGLRHLGHVELVQAGSGTLMILRHMAPLSAADKEKLECFSHSQGLSLFLAPQSEILE
SLSEESPWYDSNGLRLTFSPRDFIQVNEGVNQQMVARALEWLDVQPEDRVLDLFCGMGNF
TLPLATRAASVVGVEGVPALVEKGRENALNNGLHNVTFFHENLEEDVTRQPWAKNGFDKV
LLDPARAGAAGVMQHIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRRLAMLDMFPHT
GHLESMVLFERM
NT seq 1299 nt   +upstreamnt  +downstreamnt
atggcgcaattctactctgcaaaacgacgcgtgacgacgcgtcagatcataaccgttacc
gtcaatgacctcgatccttttggtcagggtgtcgctcgccataacggaaaggcgttgttt
ataccggaattgttaccccaggaaagcgccgaggtggtgattaccgaagataaaaaacag
ttcgcccgcgcgcaagtaaaacgacgtttaaacgacaatccacagcgtgaagtgccgcgt
tgcccgcattttggcgtgtgcggcggttgccagcagcagcatgccagcatctcgttacag
cagcgcagtaaaagcgctgcattgtcgcgtttaatgaaatgtgaagtatcggatgttatc
gctgatacgccgtggggctatcgtcggcgcgcacgtttgagcctgaactatcggccaaaa
gaacaaaaattgcagatggggtttcgcaaatccggttccagcgacattatcgatgtcaaa
caatgccctattttggtgccccagcttgaagcgctattgccccacatcagggcgtgtctg
gaaagtctgcaagggttacgccatcttggtcatgtcgagctggtgcaggcggggagcgga
accctgatgattttgcgccacatggcgccattaagtgcggcggataaagaaaaactggaa
tgcttttcgcattctcaagggctgtctttgtttctggccccgcaaagcgagatactggaa
tcattatcagaagaatcgccctggtatgactcaaatggactacggttaaccttcagccca
cgtgattttatccaggtcaacgaaggggtaaaccaacaaatggttgctcgtgcgctggaa
tggctcgatgtacaacctgaagatcgcgtactcgatctgttctgtggaatgggaaatttt
accctgccgctggcaactcgggcggcgagtgtcgtgggagtggaaggggtgccggcgttg
gtggaaaaaggccgtgaaaacgcgctgaataacggattacacaatgtgacattctttcat
gaaaaccttgaggaagatgtcacccggcagccgtgggcgaaaaacggatttgacaaagta
ttgctcgatcctgcgcgtgcgggggctgcaggtgtaatgcaacatattataaaattagaa
cctatacgcgttgtttatgtatcctgtaatccggcaacgctggctcgtgacagcgacgct
ttgctcaatgcgggatatgccatacggcgactggcgatgcttgatatgttcccgcacact
ggacacctggaatcaatggtcctgtttgagcgtatgtaa

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (20)   
   Pfam (20)   
All databases (22)   

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