KEGG   Croceibacter atlanticus: CA2559_08811
Entry
CA2559_08811      CDS       T01256                                 
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
cat  Croceibacter atlanticus
Pathway
cat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CA2559_08811
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cat03019]
    CA2559_08811
   03009 Ribosome biogenesis [BR:cat03009]
    CA2559_08811
Enzymes [BR:cat01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CA2559_08811
Messenger RNA biogenesis [BR:cat03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CA2559_08811
Ribosome biogenesis [BR:cat03009]
 Prokaryotic type
  rRNA helicases
   CA2559_08811
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII GRP
Other DBs
NCBI-ProteinID: EAP86121
UniProt: A3UBX0
Position
complement(1931684..1933555)
AA seq 623 aa
MGFTEPSEVQEKAIPILLEKDTDIVALAQTGTGKTAAFGFPLIQKIDAGYKKTQGLILSP
TRELCLQITNELQNYSKYVKGLNPVAVYGGASITEQAKQIKRGAQIIVATPGRMQDMIRR
GLVDISEIQYCVLDEADEMLNMGFYDDITEILSHSPEDKFTWLFSATMPKEVARIAKDFM
NNPVEITVGSKNKGTENVSHEYYLVGGRDRYKALKRLCDANPEIFSVIFCRTKRDTQKVA
EQLIQDGYSAGAIHGDLSQNQRDLVMRSFRTRQIQMLVATDVAARGIDVDDITHVIHYTL
PDEPEVYTHRSGRTGRAGKSGTSMTIATKSEMRKIKAIEKRIQRNFERKDVPDGEEICQV
QLFHLASQIKDTEINHAIDKYVPQLEEELGDYTKEELIKKFFSVEFTRFHNYYSKDSISQ
VSADNRDYSEGDSDSVRYFINVGGKDGFDWMSLKDFLKEQLDLDRDGVYKVDVKNTFSFF
NTDADKLDKVMEVFADMTHEGRSVNVEVTKDKGGSGGGGGRRSGGGGRRSGGGGFKGKGG
GGRRSGGDRSKGSRDGGGFKGKRRSSDSDRGDSGRDRKKSSRRSSDSSSRSSSPKRERSS
EGSGSTRAENVKSSISRRRSRRK
NT seq 1872 nt   +upstreamnt  +downstreamnt
atgggattcactgaacctagtgaagtacaagaaaaggccatcccaatcctattagaaaaa
gacacagatattgttgcgttagcgcaaacaggtactggtaaaactgctgcttttggtttt
cctttaatccaaaagattgatgctggatacaagaaaactcaagggttaatcctgtctcca
acacgtgagctttgtcttcaaattacaaatgagcttcaaaattactctaaatatgtaaag
ggattaaatcctgttgcagtttatggtggcgctagcattacagaacaagctaagcaaata
aaacgtggtgctcagattattgttgctacgcctggtcgtatgcaagatatgataagacgt
ggtttagtagacatttctgaaatacaatattgtgttttagatgaagcagatgagatgtta
aatatgggtttctatgatgatatcacagaaattctttctcactcaccagaagataaattt
acttggttatttagtgcaacaatgcctaaagaggtagcacgaattgctaaagactttatg
aataatcctgttgaaattacagtaggatctaaaaataaaggtacagaaaacgtatctcac
gagtattacctagttggtggtcgtgaccgttataaagcattaaagcgtttatgtgatgca
aacccagagattttctctgttatattttgccgtacaaaacgtgatactcaaaaagttgca
gagcaattaatacaagatggttatagcgctggcgctatacacggtgatttaagtcaaaac
caaagagatttggtaatgcgtagtttccgtacacgccaaatacaaatgcttgtagctaca
gatgttgctgctcgtggtatagatgtagatgatattactcacgtaattcattacacgctt
ccagatgagccagaagtatacacacaccgtagtggtcgtactggtcgtgcaggaaaaagt
ggtacttctatgactattgctacaaaaagcgaaatgcgtaagattaaagctattgaaaaa
cgcatacaacgtaactttgagcgtaaagatgttcctgatggtgaagaaatttgccaagtt
caattatttcaccttgcaagccagattaaggatacagaaataaatcatgctattgataag
tatgtacctcaattagaagaagagttaggtgattacactaaagaagaacttattaaaaag
tttttctctgttgaatttacaagattccacaattactatagtaaggatagcataagccaa
gtatctgcagacaatcgtgattatagtgaaggagactcagacagtgttcgttactttatt
aacgttggtggtaaagatggttttgattggatgtctttaaaagacttcttaaaagaacaa
ttagatttagatcgtgatggcgtttacaaagtagatgttaaaaacaccttctctttcttt
aatacagatgcagacaagcttgataaggttatggaagtctttgcagatatgactcacgaa
ggtcgtagtgtaaatgttgaagtgactaaagacaagggtggctctggtggcggcggtggt
cgtagatctggtggtggcggtcgtcgttctggcggtggtggctttaaaggaaaaggcggc
ggtggtcgtcgttctggaggagacagaagtaaaggctctagagatggcggtggctttaaa
ggtaagcgaagaagcagtgacagcgatagaggcgacagcggaagagacagaaaaaaatct
tcaagacgcagtagcgattcttctagcagaagctcaagccctaaacgagaaagatcttct
gaaggcagcggaagcacgagagcagaaaatgttaaaagctctataagcagaagacgttct
agacgtaaataa

  All links  
Gene (20)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (26)   

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