KEGG   Cajanus cajan (pigeon pea): 109801140
Entry
109801140         CDS       T04868                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    109801140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccaj03400]
    109801140
DNA repair and recombination proteins [BR:ccaj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     109801140
SSDB
Motif
Pfam: Tyr-DNA_phospho FHA FHA_2
Other DBs
NCBI-GeneID: 109801140
NCBI-ProteinID: XP_020217731
Position
6:23710332..23716269
AA seq 633 aa
MSVSQVGYLVPLNQNLEEEASVPKLSISDGTNVIGRNNIRVSDKRLSRKHLTLTPSPNGS
VNLLVEGTNPIVVNSGNKRRKLNPKEEATICNGDIIELIPGHHLFKYKLFNEAQSSFKNK
ASARTSKDKVETCSQKQERKYVHSQSSEDNSVEAIRNFRLTNDQVPTTFRLLRVQGLPSW
ANTSSVSIADVIQGDILVAILSNYMVDIDWLVPACPALSKVPHVLVLHGESDGRVDYIKR
SKPANWILHKPPLPISFGTHHSKAMLLIYPQGVRVIVHTANLIYVDWNNKSQGLWMQDFP
WKDQNSLSKGSGFENDLVEYLSMLKWPEFSVKLPSLGNVSVCPSFFRKFDYSEARVRLIA
SVPGYHSGASLKKWGHMKLRSLLQECTFDEEFKKSPLVYQFSSLGSLDEKWMAELASSMS
AGLSEDKTPLGMGEPLIIWPTVEDVRCSLEGYAAGSAIPSPLKNVEKAFLKKYWAKWKAD
HTGRCRAMPHIKTFARYNNQNLAWFLLTSSNLSKAAWGALQKNNTQLMIRSYELGVLFLP
SSFKRHGSVFSCTSNVAQSEDKIPARETSEMKKTKLVTLTGLRGRMHSSSEVIIQLPLPY
ELPPMPYSSQDTPWSWDRQYNKKDVYGNVWPRM
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgtctgtgtctcaggttggatacttggttccgctgaatcaaaatttagaggaagaagct
tcagttcccaagttatctatctcagatggcacaaatgttattgggcggaacaacattcgt
gtctccgacaagaggcttagccgcaaacacctcactttaactccttctcccaatggctcc
gttaatttgctcgtcgaggggacaaaccctatcgtcgttaattccgggaataagagaagg
aagctgaaccctaaagaagaagctaccatttgtaatggtgatataatcgagctcattccc
ggtcaccatctttttaaatataagctcttcaacgaagctcaatcatcattcaaaaataaa
gcttcagccaggacttctaaggataaggttgaaacatgcagccagaaacaagaacggaag
tatgtgcattctcagtcgagtgaagacaatagtgtggaggctattcgtaatttccgtctc
actaatgaccaagtacctaccacatttcggcttttgcgcgtgcaagggttaccatcttgg
gcaaatacttcttctgtttctatagcggatgttatccagggggatattctagttgctatt
ctttcaaactacatggtagacattgactggttggttcctgcatgtcctgcactttcaaaa
gtgcctcatgtgctagttcttcatggagaaagtgatgggagggtggattacattaagaga
agcaaaccagcaaactggattctgcacaaaccaccactgccaatttcatttgggacacac
cactcaaaggccatgctgcttatatatcctcaaggggtgagagtcattgttcatacagca
aacttaatttatgtagattggaacaataaaagccaaggtttgtggatgcaagattttcca
tggaaagatcaaaatagtctgagcaagggatctggatttgaaaatgacctggttgaatat
ctcagtatgttgaagtggccagaattctctgttaaacttccatcccttggaaacgtcagt
gtatgtccatctttcttcaggaagtttgattatagtgaggcaagggttagattaattgca
tctgtacctggatatcactctggtgctagtttaaaaaagtggggacatatgaaactacgt
tctctgctccaggagtgtacttttgatgaagaatttaagaaatctccacttgtttatcag
ttctcctcccttggctctttagatgaaaaatggatggctgagctagcatcatcaatgtca
gcaggtctctctgaagacaaaacaccccttggtatgggggagcctctaatcatatggcct
actgttgaagatgtcagatgctctttagagggctatgcagctggaagtgcaattccaagt
cctctgaagaatgtggagaaagcatttttgaaaaagtactgggcaaaatggaaagcagac
catacaggtcgctgccgtgctatgccacatataaagacttttgctcgttataataatcag
aatcttgcttggttcttgttaacttcgtcaaatcttagcaaagctgcctggggagctctc
cagaagaataatactcagttgatgattcgttcatatgagctgggggtgctatttctacca
tcatcattcaaacgacatggatctgtattttcctgtaccagtaatgttgcacagtctgag
gataaaatcccagccagagaaacatctgaaatgaagaaaacaaaactggtaaccctaact
gggctaaggggaagaatgcattcatcatctgaagttattatccaattacctttgccttac
gagctccctccaatgccttattcttcccaagataccccctggtcttgggaccggcaatat
aacaagaaagatgtatatggtaatgtttggccgcggatgtaa

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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