KEGG   Cynara cardunculus var. scolymus (artichoke): 112513124
Entry
112513124         CDS       T05604                                 
Name
(RefSeq) ubiquitin receptor RAD23d-like isoform X1
  KO
K10839  UV excision repair protein RAD23
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03420  Nucleotide excision repair
ccav04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    112513124
  09124 Replication and repair
   03420 Nucleotide excision repair
    112513124
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:ccav03051]
    112513124
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112513124
Proteasome [BR:ccav03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    112513124
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      112513124
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin Rad60-SLD UBA_7 TECR_N Rad60-SLD_2 Dsc3_N UBA_RAD5A Ubiquitin_4 Crinkler UBA_3 Ubiquitin_2
Other DBs
NCBI-GeneID: 112513124
NCBI-ProteinID: XP_024975041
Position
LG 5:complement(31458833..31465245)
AA seq 397 aa
MKINVKTLKGTHFEIEVKPQDTVADVKKEIEKVQGPAVYPAAQQMLIHQGKVLKDATTLE
ENKVAENSFIVIMLSKSKSSASGSSTTVAAPANVAQPASAVAPSTQPSQVSQPAPTVAPS
ESSLQSIHDTVSVPVPVPSPATRGETNVYAQAASNLVAGSNLETTIQQILDMGGGSWDRE
TVIRALRAAFNNPERAVEYLYSGIPEQAEVPPVAQAPVGGQATNSPAPALAPAPAPAPAA
QPASLAGGPNANPLDLFPQGLPNVGSNASAGTLDFLRNSQQFQAFRAMVQANPQILQPML
QELGKQNPNLMRLIQDHQADFLRLINEPVEGEGNVLGQLAGAMPQSVTVTPEEREAIERL
EAMGFDQALVLEVFFACNKNEELAANYLLDHMHEFEE
NT seq 1194 nt   +upstreamnt  +downstreamnt
atgaagatcaacgtcaaaactctcaaaggcacacactttgagatcgaagtcaaaccccaa
gacacagttgctgatgtcaagaaagaaatagagaaagtacagggtcctgctgtttatcca
gctgcacaacaaatgctaatacatcaaggaaaagttctcaaggatgctacaacgctggag
gagaacaaagttgctgaaaatagttttatcgtcattatgttaagtaagagcaagagttca
gcaagtgggtcatcaaccaccgtggctgctcctgcaaatgtggctcaacctgcgagtgca
gtggctccttcgacccagccttcacaagtttctcaacctgctccgactgtggcaccctca
gaatcttctcttcaatctattcatgatactgtttctgttcctgttccggtcccgtctcct
gccaccagaggagaaacaaacgtatatgctcaagcagcttcgaatctagtcgcaggaagt
aatttagagactactatccagcaaatcctcgatatgggtggaggaagttgggaccgggaa
acagttattcgtgcacttcgtgctgcatttaacaacccagagagagctgtggaatacctg
tattctggtattcctgagcaagctgaagttccaccggtggcacaagctcctgtaggtgga
caagcaacaaactctccagctccagctttggctccggctccggctccggctccagccgcc
caaccagcatccctcgctggtggtcctaatgcaaaccctcttgatcttttcccacagggg
cttccgaacgtgggttcaaatgcaagtgccggtaccttggatttcttgagaaatagtcaa
cagttccaagcattccgagccatggtgcaagccaatcctcaaatcttgcagcctatgctt
caagagctaggaaagcaaaacccaaacctcatgcggcttattcaagaccatcaggcggac
tttttacgcttgataaatgagcctgttgaaggcgagggaaacgttctgggacaactggct
ggagcaatgccgcaatctgtaacagtaacacctgaagagcgtgaagcaattgaacgtctg
gaggcgatgggttttgatcaagcattggtactggaagtatttttcgcttgcaacaagaac
gaggagctagcggctaactatcttttggatcatatgcatgagttcgaagagtga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (13)   
   Pfam (13)   
All databases (20)   

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