KEGG   Cynara cardunculus var. scolymus (artichoke): 112515939
Entry
112515939         CDS       T05604                                 
Name
(RefSeq) putative uncharacterized protein DDB_G0286901 isoform X1
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    112515939
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccav03021]
    112515939
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112515939
Transcription machinery [BR:ccav03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     112515939
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     112515939
SSDB
Motif
Pfam: NUFIP1
Other DBs
NCBI-GeneID: 112515939
NCBI-ProteinID: XP_024978688
Position
LG 7:10265564..10274594
AA seq 627 aa
MNPHHNSNQNPAAASAVQQVNSVINQQLCNGNAGGLYPNTRPIVAPSGFMNFPNQPFPLQ
NTMGQFPNGIGGFNPQQNFNPFPVNQFNPSQQQQGQFFAHNSMNPNAYNQNVGLPNEQVI
LQNTIQNICQLLQLQNRDYTQCPPVNFPMFQNQIANVMGHQNPGFHANQQFGLSNANGPV
QHANQGQQRFVSPMDGNVSKQLPNMGQQLQGNPFLPHAPGSVQTQQALATVTNFQHQIAQ
GMGPQNHSYPQNQLFGMANSNGPGQPVNQGQQRFVAPMMDVNASRQIASTGQQGSLLLPH
PSASVQKQNPCPTLANFEDNHGNIPANGNAKWTESQRKNFTGHKRNDLSHKGFKSQFQHA
KHVKEKFGTYNGNTNKEGNNNAAVNSGPRNSTNQIHSEKKYCVKYTEQEVKQWREARKKH
YPSSANVEKKCKKEQALSDVTNQGAMLRRQQLKEILTKQAELGCEVADIPSYYLSVSEKQ
IPRGKKHEREQYKKGKKFRNKRGTQLEDDDDRITKKTRPGGQDPHKPKQREPSLLQKLLT
RDIKRDKTHLLQVFRFIAANSFFTGERHESLRFPSVIVRETNADVASETTSSVCNVSEKA
VDVRCDDGKCNGEVLLEEPEEEGEITD
NT seq 1884 nt   +upstreamnt  +downstreamnt
atgaaccctcatcacaattccaatcaaaatccagcagctgcttcagcagttcaacaggtt
aactcagtcattaatcagcaactgtgcaatggtaatgctggaggattatatcccaatact
aggccaattgtagctccatctggtttcatgaatttccctaatcagccctttcccttgcaa
aatactatgggtcaattccccaatggtattggtggattcaatccacagcagaattttaat
ccctttcctgtaaaccagtttaatccttctcaacagcaacagggccagttctttgcacac
aattccatgaatcctaatgcatacaaccaaaatgttggtttacctaatgagcaagtcatt
ctgcagaatacaatccaaaatatctgtcagcttctccaattacaaaaccgtgattatacc
caatgtcctcctgttaattttcccatgttccagaaccagattgcgaatgttatgggtcat
caaaatccaggctttcatgcaaatcagcagtttgggttgtctaatgctaatggccctgtc
caacatgccaatcaagggcaacagagatttgtttcgccaatggatggcaatgtttcgaaa
cagttacctaatatgggccagcaattacaagggaacccgtttttaccccatgctcctggt
tcagttcaaacacagcaagcacttgctactgtcacaaatttccagcaccagattgctcaa
ggtatgggtcctcaaaatcacagctatcctcagaatcagttgtttggcatggctaattca
aatggtcctgggcaacctgttaatcaaggacaacaaagatttgttgcaccaatgatggat
gtgaacgcttcaagacagatagccagtacgggtcagcaagggagcttgcttttaccccat
ccttctgcttcagttcaaaaacagaacccgtgccccactctcgcgaattttgaggacaat
catggaaacatacctgccaacggtaatgccaaatggactgagtctcaacgcaagaacttc
acagggcataaaaggaatgatctctcacacaagggattcaagtcccagtttcagcatgca
aaacacgtgaaagagaagtttgggacctacaacggcaatacgaataaagagggtaacaat
aatgctgcagtaaattctggtccacgaaattccaccaatcagattcattctgaaaagaag
tattgtgtgaagtacaccgagcaagaagttaagcagtggcgtgaggctcgtaagaagcac
tacccctcatctgcgaatgtggagaagaagtgtaagaaagaacaggcattgtctgatgtc
accaaccaaggagccatgttacgtcgccagcaattgaaggaaatattgacaaaacaggct
gagttgggttgtgaagttgctgatattccgtcatattatttatctgtctccgagaaacaa
atcccaagagggaaaaaacacgaaagggaacagtataagaaggggaagaagttccgtaac
aaaagaggaacacaacttgaggatgatgatgaccgaatcaccaagaaaacaaggccagga
ggccaagatccacataagccaaaacagcgggaaccatcgcttttgcaaaaacttttgact
cgagacattaagagagacaaaacccatcttttgcaggttttcaggttcatagcagccaac
tctttcttcactggggagcgacacgagtctttgagattcccatctgtaattgtgagagaa
acaaatgctgatgtggcttcagagacgacttcttctgtttgcaacgtttccgagaaggcg
gttgatgtcagatgtgatgacggaaaatgtaatggtgaagtgttgctcgaggaaccagag
gaagaaggagaaatcactgattga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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