KEGG T05604: 112525845

Cynara cardunculus var. scolymus (artichoke): 112525845

Entry

112525845         CDS       T05604

Name

(RefSeq) pre-mRNA-splicing factor CWC22 homolog

K13100

pre-mRNA-splicing factor CWC22

Organism

ccav Cynara cardunculus var. scolymus (artichoke)

Brite

KEGG Orthology (KO) [BR:ccav00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112525845
Spliceosome [BR:ccav03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    112525845
Complex C
   U4/U6.U5 tri-SnRNP related factors
    112525845

SSDB

Motif

Pfam:

MA3 MIF4G

Other DBs

NCBI-GeneID:

112525845

NCBI-ProteinID:

XP_024991904

Position

LG_13

AA seq 918 aa
MERQRDKNGDRSDDEDHKYRRRDGDKFRSERDSQDRRINKSDEEDINGRRGRDRNRDRRI
DDEVVIDRRDRNRKRSDDEDANDRRRDRHGDKRNAAGYADDRRRNMNRDDTRSRDRNRDG
RSDDENANDKWRKDRNKDKEIDAEDDNARRRGRSRDLRGDEEDGNDRRNKQMDEDRRKRG
KNKDIRSDEEDGNDRSNRKKSEDRKRSDEHDQSGEEVGEIRKAGKKHEERSDEEDGEIRK
RGRKGKHEGRSDNEDGEIRKRGRKGKHEDMSDDEDGEIRKRGRKGKHEGRSDEEDGEIRK
RGRKGRDRRSDDEDDSKDRRRRDRNKDAKVDEGPRFQKLAEMQESMTNLGKSGGVYIPPF
KLARMMNEVQDKSSMEYQRMTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLF
CRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIILQLQRAYKRNDKPQLLAAV
KFIAHLVNQQIVHELIALELLTTLLENPTDDSVEVAVGFVTECGSILQDLSPRGLHGIFE
RFRGILHEGEIDKRVQFLIEGLFALRKAKFQGHPAVRPELDLVELEDQLTHEVSLLDKID
PEISLDIFKLDPSFIENEKRYEDLKKTILGDESEEEEEGGEDSDDEEDESSEEEDEEQMR
IRDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTY
LRYYGLLGQRFCMINKVYQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWH
VLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIGLLNERLSEPTMQADFESIFPRDNPKN
TRFSINFFTSIGLGGITENLREYLKNMPRLIMQQKPASESDDSDSSSSGSGSSSSDESSD
SDSDSESDHKRSKRRKRR

NT seq 2757 nt +upstreamnt +downstreamnt
atggagagacaaagggacaaaaacggagataggagtgacgatgaagatcataaatatagg
agaagagatggagataagtttaggagtgaacgtgatagtcaggatagaaggatcaacaag
agtgatgaggaagatataaatggtaggaggggccgagataggaacagggatcggaggatt
gatgatgaagttgttattgataggagagataggaacaggaaaaggagtgacgatgaagat
gcaaacgacaggagaagagatcggcatggggataaaaggaatgctgctggttatgctgat
gataggaggagaaatatgaacagggatgatactaggagcagagatagaaacagggatgga
cggagtgatgatgaaaatgctaatgataaatggaggaaagatagaaacaaggataaagag
attgatgctgaagatgataatgccaggagaagaggtaggagcagggatttaaggggtgat
gaagaagatggtaatgataggaggaacaagcaaatggatgaagacaggaggaaaagaggt
aagaacaaggacataaggagtgatgaagaagatggtaatgataggagcaacaggaaaaag
agtgaagacaggaaaagaagtgatgaacatgatcagagtggtgaagaagttggtgaaatt
aggaaagcagggaaaaagcacgaggaaaggagtgatgaggaagatggtgaaatcaggaag
agagggaggaagggaaagcatgagggcaggagtgataacgaagatggtgaaatcagaaag
agagggagaaagggaaaacatgaggacatgagtgatgatgaagatggtgaaatcaggaag
agagggagaaagggaaagcatgagggcaggagtgatgaggaagatggtgaaatcaggaag
agagggagaaagggtagggatagaaggagtgatgatgaagatgatagtaaggacaggagg
agaagggacaggaataaggatgcaaaggtggatgaaggcccacggtttcaaaagctggcc
gaaatgcaagaaagcatgaccaacttagggaagagtggaggagtttacattcctccattt
aagttggctcgtatgatgaatgaagttcaagataaaagtagcatggaatatcaaagaatg
acatgggatgcattaagaaagagtataaatgggttagtcaacaaggtcaatgcaacaaat
atcaagaatatcatccctgagttgtttgctgaaaatttgatcaggggaagaggactattt
tgtcgatcctgtatgaagtcccaaatggcttctcctggttttacagacgtttttgcagcg
ctggttgcagttgtaaacaccaaattccctgaagtgggagaccttctactgaggaggatt
attttgcagcttcaaagggcatataagcgaaatgacaagcctcaattgcttgctgcggtt
aagtttatagcccatttggtcaaccagcagatagttcatgagcttattgctcttgaacta
ctcacaactctgttagaaaatccaactgatgatagtgtggaggttgctgttggttttgtt
actgaatgtggatccatacttcaggatctaagtccccgaggtttgcatggtatttttgag
cgctttcgtggaattcttcatgagggagagatagacaaaagggtgcagttcttgattgaa
ggtctctttgcactcagaaaggccaagtttcaggggcatccagctgttcgtccagagttg
gaccttgttgagctggaagatcagttaacacatgaagtatcgcttctggataagatcgat
ccagagatttccttagatattttcaagttggatcctagtttcatcgagaacgaaaagcgc
tatgaagacttgaagaaaaccattcttggtgatgaatctgaagaagaagaagagggtggt
gaggattcagatgacgaggaagatgaatcttcggaagaagaggatgaggagcagatgaga
attagggatgagacagagacaaatcttgtcaatctccggagaaccatatacttgacaatt
atgtctagtgttgattttgaggaagctggtcataaacttctgaaaatcaaactggagcca
ggacaggagatggaactgtgtataatgttattagagtgctgcagtcaggaaagaacttac
cttcgttactatggccttttgggacagcggttttgtatgatcaacaaagtctaccaagaa
aattttgagaaatgttttgtgcagcaatactctatgatccatagactcgagacgaataag
ctgcgtaacgtggccaagttttttgcacatttacttgggactgatgctttgccttggcat
gttttggcttatattcggctgactgaggaggacacaacttcctcttcccgaattttcatc
aagattcttttccaggagctgtctgaacatctcggcattggtctcttgaatgagcgtctc
agtgagcccacgatgcaggcggattttgaatccatcttcccacgagacaaccccaagaat
acccggttttcaatcaactttttcacatccattgggctcggtgggatcacagagaacttg
agagagtatctgaagaacatgccgcgtctcatcatgcaacaaaagccagcttctgagtca
gacgattcagattcttctagttcaggatctggatcgtcaagctcagatgaaagcagcgat
agcgatagtgatagcgagagtgatcacaagcgtagcaagcgccggaagagacgttga

All links

Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (7)   

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