KEGG   Cynara cardunculus var. scolymus (artichoke): 112526883
Entry
112526883         CDS       T05604                                 
Name
(RefSeq) flap endonuclease 1 isoform X1
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03030  DNA replication
ccav03410  Base excision repair
ccav03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112526883
   03410 Base excision repair
    112526883
   03450 Non-homologous end-joining
    112526883
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccav03032]
    112526883
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112526883
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ccav04147]
    112526883
DNA replication proteins [BR:ccav03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    112526883
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     112526883
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     112526883
Exosome [BR:ccav04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   112526883
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc HHH_5
Other DBs
NCBI-GeneID: 112526883
NCBI-ProteinID: XP_024993077
Position
LG 14:complement(2285381..2296237)
AA seq 411 aa
MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
VTSHLQGMFNRTIRLLESGLKPVYVFDGAPPDLKKQELAKRYSRREDATADLNDAIQAGN
KDEIEKFSKRTVKVTRQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKADKVYAVASED
MDSLTFGAPKFLRHLMDPSSRKIPVMEFDISKVLEELNLTMDQFIDLCILCGCDYCDSIR
GIGGQTALKLIRQHGSIESILENINRERYQIPDDWPYEEARRLFKEPLVCADDDQLEIKW
SAPDEEGLINFLVNENGFNSDRVTKAVEKIKASKNKSSQNRLESFFKPVVSTSAPIKRKE
TKCILGSSKQVIKSKIFSRSPRQIISSFSPPVLGLHSRQPMMSSKGVCFGT
NT seq 1236 nt   +upstreamnt  +downstreamnt
atggggataaagggtttaaccaagcttctagcggacaatgctcccaaggccatgaaagag
caaaaatttgaaagttattttggtcggaaaatcgccattgatgctagcatgagcatctac
cagtttctgattgttgtcggacgaagtggtacagaaatgctgacaaatgaggcgggtgag
gtgaccagccatttacaagggatgttcaatcggacgattaggcttctggagtctggatta
aagccagtctatgtttttgatggggcacctcctgatttaaagaaacaagagcttgcaaaa
cgttactcgcggagagaagatgcaactgctgatttaaatgatgccatacaggctggcaat
aaggacgagatcgagaaatttagtaaacgtacagtgaaggtaacaagacaacataacgag
gactgcaaaaaacttttaaggcttatgggagtgcctgtcattgaggctccatctgaagca
gaagcacagtgtgcagcgctttgcaaagctgataaggtctatgctgttgcctctgaagat
atggattcccttacttttggagcacccaaatttcttcgccatttaatggatcctagctca
cgaaagatccctgtgatggaatttgatatttctaaggtattggaggaactcaaccttacg
atggatcaatttattgatctgtgcattctatgtgggtgtgattattgtgacagcattagg
ggtattggtggccagacggctttgaagctcatccgtcaacatgggtcaatagagagcatt
ctggagaatataaacagagaaagatatcaaatacctgatgattggccatatgaggaggct
cgacgccttttcaaagaaccattggtctgtgctgatgatgatcagcttgaaattaaatgg
agtgctccagatgaagaaggcttgataaacttcttggtgaatgaaaatggattcaacagt
gacagagtcacaaaggcagtagaaaaaataaaagcttccaagaacaaatcttcgcaaaac
cgattagagtcgttctttaaaccagtcgttagcacatccgctcccattaaaaggaaggaa
actaaatgcattcttggatcttccaaacaagtaatcaagagtaagatattcagtcgatca
ccccgacagatcataagcagctttagtcctccagttctaggtctgcattccaggcagccc
atgatgtcatcgaaaggtgtctgctttggaacatga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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