KEGG   Cynara cardunculus var. scolymus (artichoke): 112527410
Entry
112527410         CDS       T05604                                 
Name
(RefSeq) THO complex subunit 2 isoform X1
  KO
K12879  THO complex subunit 2
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013  Nucleocytoplasmic transport
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112527410
  09122 Translation
   03013 Nucleocytoplasmic transport
    112527410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112527410
   03041 Spliceosome [BR:ccav03041]
    112527410
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     112527410
Spliceosome [BR:ccav03041]
 Complex C
  Other components
   EJC/TREX
    112527410
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    112527410
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2 LIM_bind FapA
Other DBs
NCBI-GeneID: 112527410
NCBI-ProteinID: XP_024993820
Position
LG 15:complement(4320682..4353678)
AA seq 1868 aa
MSLPALECKYVTEDCVREWKNGNTSFRPSGPAAVLRYLYELCWNIVRGELPIQKCKSALE
LVEFSDRVSDEELSSNLADIVSQMAQDFTMPGESRARLIKLAKWMVEHSVVPLRLFHERC
EEEFLWDSEMIKIKAADLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQGSEVC
SQNTSAATVGIIKSLIGHFNLDPNRVFDIVLECFELQPDNNAFLNLIPIFPKSNASQILG
FKFQYYQRLEVNSTVPFGLYQLTAILVKKEFIDLDSIYTHLLPNDDEAFEHYNVFSAKRL
DEANKIGKINLAATGKDLMDDEKQGDVTVDLFAALEMECEAVTERSSELENSQTLGLLIG
FLFVDDWFHANILFRRLLPLNPVEHIRICDGLFRLIEKTISPAYELVHQPQLQVPEGGSD
FMETESNSIKRSFIDLPKELFEMLTSVGPYLHRNTLLLQKVCRVLRGYYLSALKSVNSGD
GSSNLEAGFGGNRTPRLHLKEARLNIEEALGACLLPSLQLIPANPAVGQEIWAVLSLLPY
EARYRLYGEWEKDDECSPMVLSAKQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMT
VLRTIVHQIEAYRDMIAPVVDAFKYLTQLEYDILEYVVIERLVQGGREKLKDDGLNLSDW
LQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGSGIELVLLQELIQQMANVQYTENMTE
EQLDAMAGSETLRYQATSFGATRNNKALIKSTNRLRDSLLPKDDPKLAIPLLLLIAQHRS
VVVIEADSPHIKMVCEQLDRCHGSLLQYVEFLCGAMTPITSYAQLVPDLHDLIHLYHLEP
EVAFLIYRPVMRLFRCQSTSDVVWPLDCDEIINSAAGKESELTDASGKLILDLGPSRKPI
MWSDLLDTVRTVLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEITKLHAALKALEE
LSDNSNSAITKRKKDKERIQESLDRLSGELQKHEENVASVRRRLAREKDKWLSSCPDTLK
INMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCC
TEYEVGRLGRFLFETLKTAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYSQFIKVH
WKWSQRITRLLIQCLESTEYMEIRNALILLTKVSNVFPVTRKSGINLEKRVAKLKSDERE
DLKVLATGVAAALAARKPSWVTEEEFGMGYLDLKPAPSIASKSVYVAPVTSTGLNMPPSE
VASGRTASSGQHHDSGTSIREPISRSKPSESKHERTESVTQKYDTGHAKVKGGSLSNGSD
ASMPSAIQSGASSSQKQIDDSGNRILEENAAKGGTKTSVDSEGRAVVKRSVPAASVSKQP
KQDLVKGEIKPKSAGRTSASAASDRDLHTDSKQAGDSSALVGHGVSAKGSTPSTRSSDIH
GNELKAETGVSKLVESRNTSVKDDSTEATDVQRRSSSRPSHSPRPDNAFVSKSSDKPTKR
MSPAEEQDRFIKRRKGEHDSRDSEPEVRFSDRERLDPRAVEKHHPVDFDKVNSDEPIRGT
DKPLDKAKDKFNERYDREHRERFERADKSHGDDIMDKSRDRSIERYSRERSVDRVQERGV
DRGSDRLLDKGKDERSKDDRNKVRHNEIPAEKSHVDDRFRGQSLPPPPPLPPHVVPQSLN
ANRRDEDADRRFGTARHSQRLSPKHDDRERRRSEENMLVSQEDAKRRREEEFRERKREER
EGFSTKLDDREREGEREKVNLLKEELDVNASKRRKLKREHLPSEPGEYSPAAPAPPLNIN
MTPSYDVRDRADRKAAVLPRTVYLEEPTRMHGKDVATKMTRRDSDPMYDREWEDEKRQRV
EPKRRHRK
NT seq 5607 nt   +upstreamnt  +downstreamnt
atgtctcttccggcgttggagtgtaaatacgtcacggaagattgtgttcgtgaatggaag
aatggaaacactagctttaggccttctggtccggcagcggttcttcgatatctttatgaa
ctttgttggaatatagttagaggggagctaccaattcagaagtgtaaatcagcactggag
ttggttgagttttctgatagagtttctgatgaagaactgtcttcgaatttagccgatatt
gtttcccaaatggctcaagactttacaatgcccggagaatctcgtgcccgtctgattaaa
ctggcaaagtggatggtggaacattctgtggtccctttgagactgttccacgaacgatgt
gaggaagagtttctatgggattcagagatgattaagataaaggctgctgatttgaagtca
aaagaggtcagggttaacactcgtcttctttatcaacaaaccaaattcaatcttcttcga
gaagaaagtgaaggctatgctaagctggttacccttctttgtcaaggttcagaagtttgt
tctcaaaatacatcagcagcaacagttggcataattaagtcattaattggacacttcaat
ttggatccaaaccgagtgtttgacattgtattggagtgtttcgaacttcagccagataac
aatgccttcttgaacctgattcccattttccccaagtctaatgcttcacaaatacttgga
ttcaagtttcaatattatcagcgtttggaagtaaatagtactgtaccttttgggctctat
cagcttacagcaatactggttaaaaaagaatttatcgatcttgacagcatatatacacat
cttcttcccaatgacgatgaagcatttgagcattataatgttttttcagcaaagcgactt
gatgaggctaacaaaattggcaaaatcaaccttgctgctacgggaaaagatcttatggat
gacgagaaacaaggagatgtgacagtagatttgtttgccgctctagagatggaatgtgaa
gcagttacagaacgctcttcagagcttgaaaatagtcaaactctgggcttgcttattggt
ttcctttttgtggacgactggtttcatgccaatatcctgttccgtcgtctcttgcctctc
aatccggttgaacatattcgaatttgtgatggactatttaggctcattgagaaaacaatt
tctcctgcttatgaacttgtccatcaaccacagcttcaagttccagaaggaggttctgat
tttatggagacagaaagtaactccattaaaagatcattcattgatcttcctaaagagcta
tttgagatgcttacttctgttggtccgtatcttcatcgtaatacattgctgctgcagaag
gtatgcagagtgttgagaggttattacctttctgcacttaagagtgtcaattctggtgat
ggctcctctaacttggaagctggttttggtggaaatcgaactcctcgtctccacctaaag
gaagctagattaaacattgaggaagcccttggcgcttgtctacttccttcactacagttg
ataccagcaaacccggctgttggacaggagatctgggctgtactgagtctcctgccatat
gaggcaaggtatcgtttatacggtgaatgggaaaaggatgatgagtgcagccccatggtt
ctatctgcaaagcagaccgcaaagttggataccagaaggatcttgaaacggcttgcgaag
gaaaatctaaagcagcttggaagaatggttgcaaaattagcacatgcaaatcctatgact
gtccttcgaacaattgtccaccagatagaagcatacagggatatgattgctccagttgta
gatgcatttaaatatctaacacagctcgagtatgatattttggaatatgttgtgattgaa
cggctggtacaaggtggtcgtgaaaagctaaaagatgatggccttaacttatctgactgg
cttcaatctttggcatcattttggggtcatctgtgtaaaaagtacccatcaatggaactc
aggggtctattccagtatctggtaaatcaattgaagaaagggagtggaatcgagcttgtt
cttctgcaggaacttatccagcaaatggctaatgttcagtacacagagaacatgaccgaa
gaacagttggatgctatggctggaagtgagactctacgttatcaggctacttcttttggg
gcgacccgaaataataaggctttaatcaaatccaccaacaggctacgggattcattgctt
ccaaaggatgatccgaagttggcaattccacttttgctacttattgctcagcatcgttct
gtggttgtcatcgaagctgactctcctcacattaagatggtttgtgaacagctggataga
tgccatggatcacttctgcaatatgtcgaattcttatgtggtgcaatgacaccaataacg
tcttatgctcagctagttccggatcttcatgatctgatacacttgtaccaccttgaacct
gaggttgcattcttaatttatcggcctgtgatgaggctcttcagatgtcagagtacatct
gatgttgtttggcctttagattgtgatgagataattaactcagctgcaggaaaggagagt
gaactcacagatgcctctggaaaacttatacttgatcttggtccctcccggaaaccgata
atgtggtcagatcttctggatacggttagaacagtgttgccttcaaaagcttggaacagc
ctctctcctgatctatatgctaccttttggggtttaacactctatgatctatatgttcct
agaaatcgttacgagtctgagataaccaaactgcatgctgctcttaaagctttggaagag
ctttctgacaattctaattcagcaatcactaaacggaagaaagacaaggaaagaatacaa
gaatctttagataggctaagtggtgaactccagaagcatgaagaaaatgttgcctctgtt
cgtagacgtttggctcgtgaaaaagataaatggttgagttcctgtcctgatacattaaag
atcaacatggagttccttcagcgttgtatatttccacgatgtacgttcagcatgccagat
gcagtatattgtgcaatgtttgtgcatacccttcattccctgggcacaccctttttcaac
acagtcaaccatattgacgttctaatatgtaaaacattacaaccaatgatatgctgttgc
actgagtatgaggttggtcggcttggtagatttctgtttgagacactcaagacggcctat
tattggaagagtgatgaatccatatatgaacgtgagtgcggaaacatgcctggatttgct
gtatattatagatacccaaacagccagcgtgtcacatatagccaattcattaaggtacac
tggaaatggagtcaaaggatcacaagattactgatccagtgcctggaatctacggagtac
atggaaattcggaatgctcttattttgcttacaaaagtttcaaatgtttttcctgttact
agaaaaagtgggatcaaccttgagaaaagggtagctaaacttaagagtgatgaaagagaa
gatttaaaggtgttggctactggtgttgctgcagccttggctgctcgaaagccttcatgg
gttacggaagaagaatttggaatggggtatcttgatttgaagcctgcaccatcaatagct
tcaaaatcagtatatgttgctccagtgacaagtactgggcttaatatgcctcctagtgaa
gttgcaagtggtagaactgcttcttcaggccagcatcatgattctgggacttctatcaga
gagcctatatcgagatcaaaaccttctgaaagtaaacatgaaagaacagagagtgtcaca
cagaagtatgacacagggcatgcaaaagtaaaaggtggttcattgagtaatggttcagat
gcttccatgccgtctgctatacaatctggagcatccagtagtcaaaagcagattgatgat
tctgggaacagaattttagaggagaatgctgcaaaaggtggtaccaagacatctgtagac
tctgaggggagagctgtagtgaaaaggtcggtgcctgctgcatctgtatcgaagcaacca
aagcaggatcttgtgaagggtgaaattaaacctaaatctgctgggagaacgtcagcgtct
gctgctagtgatagagatcttcatactgacagtaaacaggctggggactcttctgcactt
gttggccatggtgtctcagcaaaaggatccacaccatctacaagatcatcggacatccat
ggcaatgagttgaaggctgagactggagtttcgaagcttgttgaatcaagaaacacttct
gtgaaagatgattccacagaagctacggatgtgcaacgtcggtcctcatctcgaccatct
cattctccaaggcctgataatgcttttgtctcaaaatctagcgataaaccaacaaagaga
atgagtccagctgaagaacaggacaggtttattaagcggcggaaaggagaacatgattca
agagactcggagcctgaggttcgattttcggatagagagcgacttgatccccgagcagtt
gagaaacatcaccctgttgattttgacaaagtaaattctgatgagccaatccggggtact
gataagccattggataaagcaaaagacaagttcaatgaaagatacgatagggagcaccga
gaaagatttgaacgtgctgacaagtcccatggagatgatatcatggacaaatcaagagat
aggtcaatagaaagatacagcagagagcgctcagttgatagagtgcaagagagaggtgtt
gataggggttctgataggcttcttgataaaggtaaggatgaaagaagtaaagatgacaga
aataaagtgcggcacaacgagattccagcagaaaagtcccatgttgatgatcgatttcgt
gggcaaagtttaccaccccctccacctctacctccgcacgtggttccccaatctttaaat
gccaatagaagagacgaagatgctgatagaaggtttggaacagctagacattcacaacga
ttgtctccaaaacatgatgacagggaacgtagacggtctgaggagaatatgttagtttct
caagaagatgcaaagcgaagaagagaagaagaatttcgagagagaaagcgagaagagcga
gaaggattttcgacaaagttggatgatagagaacgagaaggagagagggaaaaggttaat
cttttgaaggaggagctggatgttaatgcttccaaaaggcgaaaactgaaaagagagcat
ctgccctcagagcctggtgagtactcaccagccgctccggcacctccccttaatataaac
atgacaccatcatatgatgtcagagatagggcagaccgaaaagcagctgttcttccacga
accgtttacttggaagaacctactcgtatgcatggaaaagacgtagctaccaagatgacc
cgtcgtgattcagacccaatgtacgacagagaatgggaagacgaaaaacggcaaagggtc
gaaccaaagaggaggcaccggaaatag

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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