KEGG   Cinclus cinclus (white-throated dipper): 134049474
Entry
134049474         CDS       T10813                                 
Symbol
PDGFRB
Name
(RefSeq) LOW QUALITY PROTEIN: platelet-derived growth factor receptor beta
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
ccic  Cinclus cinclus (white-throated dipper)
Pathway
ccic04010  MAPK signaling pathway
ccic04020  Calcium signaling pathway
ccic04510  Focal adhesion
ccic04518  Integrin signaling
ccic04519  Cadherin signaling
ccic04540  Gap junction
ccic04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:ccic00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    134049474 (PDGFRB)
   04020 Calcium signaling pathway
    134049474 (PDGFRB)
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    134049474 (PDGFRB)
   04519 Cadherin signaling
    134049474 (PDGFRB)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134049474 (PDGFRB)
   04540 Gap junction
    134049474 (PDGFRB)
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    134049474 (PDGFRB)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:ccic01001]
    134049474 (PDGFRB)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:ccic04090]
    134049474 (PDGFRB)
Enzymes [BR:ccic01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     134049474 (PDGFRB)
Protein kinases [BR:ccic01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   134049474 (PDGFRB)
CD molecules [BR:ccic04090]
 Proteins
  134049474 (PDGFRB)
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase Ig_3 I-set VEGFR1-3_N_Ig-like ig Ig_2 Ig_VEGFR-1-like_5th V-set VEGFR-1-like_Ig-like C2-set_2 DUF4452 BACON_2
Other DBs
NCBI-GeneID: 134049474
NCBI-ProteinID: XP_062357933
Position
14:complement(14752134..14773095)
AA seq 1150 aa
MAFWQPWNKSEECPADARTRDEKPGXSLILVLCPLLPSFSDLVRRSSRTRTPSPEPSMLC
PTLKMCLWLLILTGLLEVMFGDSRLHIEPRDTELVLNLHSTFSLLCYGDRELVWEREGQP
LSASLEHRDGVFVSNLTLRNVTGHHTGEYTCTYSPEQAPEPAERRALYIYVPDPSLVFLP
TVTSEEVFIFITGYTEAVIPCRVTNPQMQVTLYEKKVENPIPATYDPQQGFKGFFEDKTY
FCRTFVDDQEVDSDTFYVYRIQVSSVNVSISAVQTIVRQGENVTVMCTVSGNELVNFNWD
YPRKQAGKAVEPVTDFLPGSTHEIRSILIIQNAELEDSGTYVCNVSEGYHEKTDRKDITV
QVIERGFVHFDTHLPSTVYAEVHKSHTIQVEVEAYPQPSIVWLKNNKTLTMESSSEFTIT
SRNLSETRYQTALVLVRVKQEEGGFYTIRASNEDDEKELSFHLQINVPAKVVDLKENSSA
SSGEQTVTCSAEGMPQPEISWSTCSDIKWCSTKGQPTRLLGNESAEIGVQTNASYHAERQ
LYRVNSTLQLHRVHEPLLLRCTVQNFLGTNSQDITLVPHALPFKVVIISVILALLVLTVI
SLIILIVLWQKKPRYEIRWKVIESVSSDGHEYIYVDPMQLPYDSTWEVPRDKLVLGRTLG
SGAFGRVVEATAHGLSHSRSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNL
LGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQSYGDKARQEAELYGNTPKEDHVHSH
LSMSVESDGGYMDMSKDDSLDYVPMSDMKGEVKYADIESSNYGTPYELDSYSPSAPERTD
RVTLINESPLLSYMDLVGFSFQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGL
ARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPEL
PMNEQFYNAIKRGYRMSKPTHASDEIYNIMQKCWEEKFEIRPSFSQLVVLMGNLLVDCYR
KRYQQVDEEFMKSDHPAVVRTRPTIPVLNNARLAASSPSSSILYTAVHQNGGENDYIIPL
PDPKPEASCDLPQEASISRASSVLNEANTSSTISCDSPLGLRQDEEQESDPQPDCQEPTT
GHQEVEESFL
NT seq 3453 nt   +upstreamnt  +downstreamnt
atggctttctggcagccatggaacaagagtgaggaatgccctgcggatgccaggacaagg
gatgagaagccaggatagtccctgatcttggttctgtgtcccctgcttccctcattctct
gatctggtgaggagaagcagcaggactcggacaccaagcccagagcccagcatgctgtgc
cccactctcaagatgtgtctctggctcctcatcctcactggtctgctggaggtaatgttt
ggggacagcaggctgcacatcgaacccagagacactgagcttgtcctcaacctccacagc
accttctccctcctgtgctatggggacagagagctggtctgggaacgggaggggcaaccc
ctcagtgcctcgctggagcacagggatggtgtctttgtcagcaatctcaccctcaggaat
gtgacaggccatcacaccggggagtacacgtgcacctacagtcctgagcaggctccagag
ccagcagagaggagagccctgtacatctacgttccagatccctccctggttttcctccct
acggtcacctctgaagaggtcttcatcttcatcacgggctacacagaggctgtcatccca
tgccgtgtgaccaacccacagatgcaggtcaccctctatgagaagaaggtggagaacccc
atcccagctacatatgatccacaacagggatttaaaggcttctttgaggataagacctac
ttctgccggacatttgtggatgaccaggaagtggattcagacactttctacgtctacagg
atccaggtgtcatctgtgaacgtctccatcagtgcagtgcagaccatagtgcgccaggga
gaaaatgtcaccgtgatgtgcaccgtgagtggcaacgagctggtcaacttcaactgggat
tatccccgcaagcaagcagggaaggctgtggagccagtgactgacttcctgcctggatcc
actcatgagatccgctccatcctcatcattcagaatgcagagctggaggacagtgggact
tatgtctgcaatgtctctgagggctaccatgagaaaacagaccggaaagacatcactgtc
caagtgatcgagcgtggctttgtgcactttgacacccacctgcccagcacagtgtatgct
gaggtccacaagagtcacactatccaggtggaagtggaggcttatccccaacccagcatt
gtgtggctgaagaacaacaagacattgaccatggagagcagcagcgagttcaccatcacc
agcaggaatctgtcagaaaccaggtaccagacagccctggtgctggtgcgtgtgaagcag
gaagaaggaggattttacaccattcgggcttccaatgaggatgatgagaaggagctctcc
ttccatctgcagataaatgtgccagctaaagtggtggatctcaaggagaacagtagtgcc
agcagtggggagcagactgtaacatgctctgctgaaggcatgccccagccagagatcagc
tggtctacttgcagtgacatcaaatggtgcagcaccaagggacagcccacccggctgctg
gggaatgagtcggccgagatcggtgtgcagaccaacgcctcgtaccacgcagagcggcag
ctctaccgtgtcaacagcaccctgcagctgcacagggtgcacgagcccctgctcctcagg
tgtaccgtgcagaacttcctgggcaccaactcccaggacatcactctggtcccacacgcc
ttgccgttcaaggtggtcatcatttctgtcatcctggccttgctggtcctcactgtgatc
tccctgatcatcctgattgtgctgtggcagaagaaacctcgttatgaaatccgctggaag
gtgattgagtcagtcagctctgatgggcatgagtacatctatgtggatcccatgcagctc
ccttatgactccacctgggaggtgcccagggacaagctggtattaggacgcactctcggc
tctggtgcctttggtcgtgtggtggaggcaacagcccatggcctgagccattcacggtcc
accatgaaagtggcagtcaaaatgctcaagtccacagcccgcagtagtgagaagcaagcc
ctcatgtccgagctgaagatcatgagccacctgggacctcacctcaacattgtcaacttg
ctgggggcctgcaccaaaggaggacccatctacatcatcaccgagtactgccgctatggg
gacctggtggattacctgcaccgcaacaagcacaccttcctgcaatcctacggggacaag
gcacggcaagaggcagagctctacgggaacacccccaaggaggaccatgtgcacagccac
ctctccatgtctgttgagagtgatgggggctacatggacatgagcaaggatgactccctg
gactatgtgcccatgtctgacatgaagggtgaagtcaagtatgctgacatcgagtcctct
aactatggcaccccctatgagctggacagctactccccctcagctcctgaaaggacagac
cgggtgacactgataaatgagtctccactcctcagctacatggacttggtgggcttcagc
ttccaggtggccaatgggatggagttcctggcttccaaaaattgtgtgcaccgtgacctt
gctgccaggaatgtcctcatctgtgaggggaagctggtgaagatctgtgactttggcctg
gcaagggacatcatgagggattccaactatatctccaaaggcagtaccttcttgcccctt
aagtggatggctccagagagcatcttcaacaacctctacaccaccctgagtgatgtgtgg
tcttttgggattcttctttgggagatattcactctaggagggactccataccctgagctg
cctatgaatgagcagttctacaatgccatcaaacgtggctatcggatgtccaaacccacc
catgcctctgatgaaatctacaacatcatgcagaagtgctgggaggagaagtttgagatc
aggccatccttctcacagctggtggtgcttatgggaaaccttctggtggattgctacaga
aagaggtaccagcaggtggatgaagagttcatgaagagtgaccaccccgctgttgtccgc
acaagacccacaattcctgtgctgaacaatgcccgccttgctgccagctcccccagcagc
agcatcctctacacagccgtgcaccagaacgggggcgagaatgattatatcatccctctt
cctgaccccaaacctgaggcaagctgtgacctccctcaggaggcctccatcagccgggcc
agctctgtgctgaatgaggccaacacatcatctacaatatcctgtgacagccccctgggc
ctccggcaggatgaggagcaggaatccgacccacaaccagactgccaggagccaaccaca
ggacaccaagaggtggaggagagtttcctgtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (18)   

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