KEGG   Coregonus clupeaformis (lake whitefish): 121579656
Entry
121579656         CDS       T08357                                 
Name
(RefSeq) platelet-derived growth factor receptor beta
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010  MAPK signaling pathway
cclu04020  Calcium signaling pathway
cclu04510  Focal adhesion
cclu04518  Integrin signaling
cclu04519  Cadherin signaling
cclu04540  Gap junction
cclu04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    121579656
   04020 Calcium signaling pathway
    121579656
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    121579656
   04519 Cadherin signaling
    121579656
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121579656
   04540 Gap junction
    121579656
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    121579656
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:cclu01001]
    121579656
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:cclu04090]
    121579656
Enzymes [BR:cclu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     121579656
Protein kinases [BR:cclu01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   121579656
CD molecules [BR:cclu04090]
 Proteins
  121579656
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase Ig_3 I-set ig VEGFR1-3_N_Ig-like Ig_2 V-set Ig_VEGFR-1-like_5th VEGFR-1-like_Ig-like Ig_MYOM1 C2-set_2 Haspin_kinase
Other DBs
NCBI-GeneID: 121579656
NCBI-ProteinID: XP_041750373
Position
13:47490547..47512343
AA seq 1091 aa
MELGLAKALPSVAIFAVLLQFCPEGFSLELSPSEKEVILSTNSSFMVVCSGWSKVTWKSP
HNPSLEGVAVEDRGSTSVLVLHNVTWRHSGNYVCEEPSTEETKDISVFVPDPEEWFVPLQ
PALVMKEGQEGTIPCVVSDPSINVTLYERASKDPVEGTYDPSKGFTAILKDSSYICRGAM
NGEEKASQVYYVYSIVVPKSMNAFMTLSKTVLKQGEALMVNCTVEDAEIVYFKWDFPRKE
MIEPLTDFLTGNREFRIRSFLNISSATLEDSGQYICRVQDTVSGQSAMDNLTVTILERGF
VALEPSINHNVSALQFESIELTVQIEAYPKPQVLWTRDNTTLTGETVSMVTRQVHETSYL
STLTLVRVRMEQRGLYTVQVANEDEVKEITFDLQVKAPPKIINLSDQHMDQGHGVLCVTE
GVPTPTIHWYSCESIGKCSNKTTAWKPLSADPENVSIQMNVSYIEASGVNHVRSLLTFQT
MGSITSVRCEARNEKGRRAWDIKLVSNSLFSQVAVLAAVLTLVVIAVIFLIILIALWRKK
PRYEIRWKVIESVSSDGHAYTYMDPMDLPYDCAWEVPRDNLVLGHTLGSGAFGRVVEATT
YGLGHSQSTTKVAVKMLKSTARTSETRALISELKIMSHLGPHLNIVNLLGACTKRGPIYL
ITEYCRYGDLVDYLHRNKHTFLQYYADRNRRDADMCRNSTESAVQIQGKSESDGGYMDMT
KEDSLNYVPMQELSDNIKYADIEPSVYETPYHQDNNYQRQGQERADVALSISDSPILSYT
DLVGFSYQVAKGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDVMNDSNYIAKG
NTFLPLKWMAPESIFQNLYTTLSDVWSFGILLSEIFTLGGTPYPDIPMNEQFYTALKRGY
RMPKPTHATDEIYDVMCKCWDEKFEKRPPFSSLVHLMGNLLTDVYKKKYTQVNESFLKSD
RSKPTPVGNPAVSPDVQSSGDRAGQETEETGEIGETGKEAGPSQTDYIIAIPDIHVVEEA
EASGEVLDTATQSTSSPPSTTDQTDTDTASLNGPEASLEEPVPTEEEVPAPTQEDKLPQS
PCTPEVEESFL
NT seq 3276 nt   +upstreamnt  +downstreamnt
atggagctgggcttggcaaaggctctgccgtcggtggccatctttgcagtgctgctgcag
ttttgtccagagggcttcagtttggagctcagccccagtgagaaggaggtcatactgagc
accaactcctccttcatggtggtctgttctggttggagcaaggtgacctggaagtctccc
cacaaccccagcctggagggagtggctgtggaggacaggggatccaccagtgtgctggtc
ctccacaacgtcacctggaggcactctgggaactatgtctgtgaagagccctctacagag
gagaccaaggacatatcagtgtttgtaccagaccctgaggaatggtttgttcccctgcag
ccagcactagtgatgaaggagggacaggaaggcaccattccctgcgtggtgtctgaccct
agcattaacgtgaccctgtacgagagggccagcaaggaccctgtggagggaacatatgac
cccagcaaagggttcaccgccatcctgaaagatagctcctacatctgccgaggtgccatg
aacggagaggagaaggcgtcccaggtgtattatgtctacagcattgtggtccccaaatcc
atgaacgccttcatgactctctcaaagactgtgctgaaacaaggcgaggccttaatggtt
aattgtactgtagaagacgcggagatagtttacttcaaatgggattttcctcgtaaagag
atgattgagccactgacagactttctaacggggaaccgggagtttagaattcgttccttc
ttgaacatctccagtgctactctggaggactctggccagtacatctgccgggtacaggac
accgtttcaggacagtcagccatggataatctcactgtcactattctggaacggggcttt
gtggctttggaaccctccatcaaccacaatgtttcagcgctgcagtttgagagcattgag
ctcacagtgcagattgaagcgtatcccaaacctcaggtgctctggaccagagacaacacc
accctcactggggaaacggtatccatggtcaccagacaggtgcatgagaccagttacctc
agtactctgaccttggtaagggtcaggatggaacagaggggcctctacactgtccaggtg
gccaacgaagacgaagtcaaggagataacctttgatcttcaagtcaaggctcccccgaag
ataataaatctgtctgaccagcacatggaccagggccacggtgtactctgtgtcacagag
ggggtccccacacccaccattcactggtacagctgtgaaagcattggaaaatgcagtaat
aagaccacagcatggaagcctctgtcggctgacccagagaacgtcagcatccagatgaat
gtgagctacatcgaggcctcaggggtcaaccacgtccgcagccttttgaccttccagacc
atggggagtattacgtcagtgcgctgtgaagcccgcaacgagaaaggacgcagggcctgg
gacatcaaactagtctccaactctctgttctcccaggtggctgtcttggctgcagtgtta
accctggtggtcatcgccgtcatcttcctcatcatcctcatcgccctctggagaaagaag
ccccggtatgagatccgttggaaggtgatcgagtcagtgagctcagatggccatgcgtac
acctacatggaccccatggacttgccatatgactgtgcatgggaggtgccccgagacaac
ctggtcctgggtcacactctgggttctggagcgttcgggagggtcgtggaggccacaaca
tatggccttggtcactcccagtccaccaccaaagtggctgtgaagatgctcaagtccaca
gcaaggacaagtgagactcgggctctgatatcagagctgaagataatgagtcaccttggg
ccccatctaaacatcgtcaacctactgggggcctgtactaaacgaggtcctatttacctc
ataactgagtactgtcgctatggtgacctggttgactaccttcaccgcaacaagcacacc
ttcctgcagtactacgcagacagaaaccgcagggatgctgatatgtgcaggaacagcaca
gagagtgcagtccaaatccaaggaaaaagtgagagcgatgggggttacatggatatgacc
aaggaagattctttaaattatgtccccatgcaagagctgagcgacaacatcaagtatgca
gacatcgagccttcagtctatgagacgccttaccatcaggacaacaactaccaaagacaa
ggccaagagagagcagacgtcgcgttgtctatcagtgactccccaattctgagctacaca
gatctggtgggctttagctaccaagtggctaagggcatggactttctggcatccaagaat
tgtgttcatcgtgacctggctgccagaaacgttctcatctgtgagggaaagctggtgaag
atctgtgactttggcctggcccgtgatgtcatgaacgactccaactacatagccaaaggc
aacacattcctgccactgaagtggatggctccagagagtatcttccagaacctctacaca
accttgagcgatgtttggtcttttggcattctgctttcagagatctttactctaggagga
acgccctatcctgacattcccatgaatgaacagttctacactgccttgaagagaggctac
aggatgcccaaacccactcatgctacagacgagatctacgatgtcatgtgcaagtgttgg
gatgagaaattcgagaagaggccaccgttctcctctctggttcatttgatgggaaacctg
ctgactgacgtttacaaaaagaaatacacccaggtgaatgagagctttctgaagagcgac
aggtccaaacccacaccagtagggaacccggctgtgtctccagatgtccagtcctcaggg
gaccgagcagggcaggagacagaggagacaggggagataggggagactgggaaggaggct
ggcccctcccagactgactacataatcgccatcccagatatccatgtagtcgaagaggca
gaagcaagtggtgaggtgctggacaccgccacacagagtacatcaagtcctccaagcaca
acggaccagaccgatactgacacagcctccctaaatgggccagaagcctccctagaagaa
ccagtacccacagaggaagaggtgcctgcccccacgcaagaagacaagctcccccagtct
ccatgtacccctgaagtggaggagagtttcctgtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (14)   
   Pfam (14)   
All databases (20)   

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