KEGG   Clupea harengus (Atlantic herring): 105902301
Entry
105902301         CDS       T09045                                 
Symbol
papola
Name
(RefSeq) poly(A) polymerase alpha
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    105902301 (papola)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105902301 (papola)
Enzymes [BR:char01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     105902301 (papola)
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     105902301 (papola)
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 MTPAP-like_central DUF4269 BrxA
Other DBs
NCBI-GeneID: 105902301
NCBI-ProteinID: XP_012685310
Ensembl: ENSCHAG00000011547
UniProt: A0A6P3W159
Position
15
AA seq 732 aa
MPFPTINQSQGVPQPTKHYGITSPISLALPKEADLALTQKLTEALQPFGVFEEELELQRR
ILVLGKLNTLVKEWIREISETKNLPVSLIETVGGKIFTFGSYRLGVHTKGADIDALCVAP
RHVERTDFFSSFYEKLKEHEEVKDLRAVEEAFVPVIKLSFDGIEIDILFARLALQTIPEN
LDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNIL
GFLGGVSWAMLVARTCQLYPNAVAATLVHKFFLVFSKWEWPNPVLLKQPEDCNLNLPVWD
PRVTPSDRYHLMPIITPAYPQQNSTYNVSISTRAVMVDEFKQGLAITDEIMQNKAEWSKL
FEAPNFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGNLEKNEFITLAHVNAHSF
PGPKEGNDKEEFSTMWVIGIVFKKMEGSENLNVDLTVDIQSFTDTVYRQAISSKMFEQEM
KITAKHVKRRQLQMLLPGNVIQARPSRRKHSTEGPRPMNDSSLDLSLDSDNSLSVPSPPT
VPATANRNCPLAVSAGPLGVTGPMTTASDKMDTSGSASPDSAAPSAPKPTQPHKGSSSDN
SPPPMGPPAVKKAISPPPEDKKPQTEEPAQVATSPSSSSPPPSGVPAVKRPGSPLPEDQS
KKPKVEEGSTGVEEEMASQGDEAMETDIKELDPEQKVPSSQCVPTTDLSDVPLPPANPIP
VLKNSIKLRLSR
NT seq 2199 nt   +upstreamnt  +downstreamnt
atgcctttccctaccattaaccaatcacaaggggtgccgcagccgaccaagcactatggg
atcacatcacccatcagtctggcactgccaaaggaggctgatctagcgctcactcagaaa
ctgacagaggccctccagcccttcggagtgtttgaggaggaactggagcttcagcgcaga
atcctagtcttggggaagctgaacactttggtgaaggagtggatacgagaaatcagtgaa
acaaagaatttacctgtttcattgattgaaacggtcggaggtaaaatcttcaccttcggc
tcttacagattgggagttcacacaaaaggtgctgatattgatgccctctgcgtggcgcct
cggcacgtggagaggactgacttcttctcctcgttttatgagaaactgaaggagcacgag
gaggtgaaggatttgcgggcggtggaagaggcctttgtccctgtgataaagcttagtttc
gacggcatagagatcgacatcctgtttgctaggttagcactgcaaaccattccagagaac
ctggacctacgagatgacagcttgctgaagaacttggacattcgctgcataaggagcctc
aatggttgtagagttactgatgaaattcttcacctggtccccaacattgacaacttcaga
ctcaccctcagagccatcaaactgtgggcgaaacgtcacaacatctactccaacatcctg
ggatttcttggtggagtatcctgggccatgctggtagccaggacctgtcagctgtatccc
aatgctgtggctgccactctggtccacaagttcttcctggtcttctcaaaatgggagtgg
cccaatcctgttctcttgaaacagccagaggattgcaaccttaatctgccagtctgggat
cccagggtgacgcccagtgatcggtaccatctcatgcccatcataactccggcatacccc
cagcagaactccacctacaacgtctccatctccacccgggccgtcatggtggacgagttc
aaacagggtcttgccatcacggatgaaattatgcagaataaagcagaatggtccaaacta
tttgaagcaccaaacttctttcagaaatacaagcattatattgtgttgctagcaagcgcg
ccgactgagaagcagcacctcgagtgggtgggtctggtggagtccaagatcaggatcctg
gtgggaaacctggagaagaacgagttcatcactctggcacatgtcaatgcacactcgttc
cctggacctaaggaaggcaatgacaaagaggagttcagcacgatgtgggttattgggatt
gtcttcaagaaaatggaagggtcagagaacctcaatgtggaccttacagtggacatccag
tcattcacagacactgtgtaccgtcaggcgatcagcagcaagatgtttgagcaggagatg
aagatcactgccaaacacgtgaagaggaggcagctgcagatgcttctgcccggtaatgtc
attcaggccaggccaagcaggaggaagcactcaacagagggcccaaggccaatgaatgac
agcagcctggacctatccctggacagtgacaacagcttgtcggtgccctctccgcccact
gtgcctgcgacagccaatagaaactgtcctcttgctgtttcagccggccccttaggggtc
acggggcctatgaccactgcctccgataaaatggacacctctggaagtgcgtcccccgac
tcagctgcaccgtcggctcccaaacccacccagccccataaaggctccagctccgacaac
agcccccctcccatggggccgcccgcggtgaagaaggccatctcccctccaccagaggac
aaaaaaccccaaacagaggagcctgcccaggtggctacttcccccagcagcagcagcccc
cctccctctggggtcccagctgtgaagcgcccagggtcccctctgcccgaggaccagagc
aagaaacccaaagtggaggagggatctacgggggttgaagaagaaatggcctcacaaggc
gatgaagctatggagaccgacatcaaggagcttgaccctgagcagaaggtgccatcaagt
cagtgtgttcccaccacagacctctctgacgtgcctctgccccccgccaatcccattcca
gtgttgaagaactccatcaagctgcgcctcagcaggtag

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (13)   

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