KEGG   Clupea harengus (Atlantic herring): 122128571
Entry
122128571         CDS       T09045                                 
Name
(RefSeq) rab11 family-interacting protein 1 isoform X1
  KO
K12484  Rab11 family-interacting protein 1/2/5
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:char00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    122128571
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:char04131]
    122128571
Membrane trafficking [BR:char04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    122128571
SSDB
Motif
Pfam: C2 RBD-FIP DUF4635
Other DBs
NCBI-GeneID: 122128571
NCBI-ProteinID: XP_042558742
UniProt: A0A8M1K507
Position
20:complement(20208445..20265991)
AA seq 1523 aa
MPLISLDDDDQRWVPTHVNVTVLRARGLRTKGKHGSRYVYTIIQLGKEKYTTGLVEKGAE
PEWIEECAFELMPGLLELEGTGAYPPGSSNLVLTVMHRVLIGLDVFLGQTIVPLDEVFQD
GMCPRNEWLKLHSKAGRPEKERGDLNVTVQFTRNNLTASMYDLSVKDKPRSAFGKLKDRV
TGRKREVESSSAIVPGRFAALSGSAGHPFSEGAQREEEQTEEPVVEERERRGSKVKDFFG
KLRKSSDTRSCSSLASDSSMASSAGEPFCPPVELSSTPIYSSRVVAESFRGETEAGGKAF
TQQDPKVMTHKRAYSDEASKVTTTSSSSVPRSCPAVETLKGQSMVLSKSSLCINGSHVYS
PETAGPAGPKANPGTLPARRALLEKCSPLSRSLQNLTRRGDDPQKAALAGGDGRRWSFDK
TKKEDGGADQAAAGASAQGAASADECSVQAATAPAETADKGKRLRRTLFSSARSDSLPAK
SEHGPASAPHEGRLKGWFGSGDSQNKPSLEVSPKVENSPDTPLPLHHRLHNQPQHPAPSH
PAHVPSSPANGCHANPFTPSPPPTSIPISPSNPFLTRLQSNPFFEELLAEEALKSPPAAG
YPGSPLSQYAAHLANPSLPSPAHRGGMRKDRAGIKRERPRSVARQRSLPVLLPGSSGSPA
SSLPNSSTNRSLSENITEWDESFEAFAASRLKSPNDTPSAPNSTTTPDNYHAVPDISGGG
RKGFPQPTEVPPLPPRRPAGAPSKDRSSQSWLGSAEELAVQREACFLTQSDLASRQHVRE
RKHRRNTKSWTLGEEPPAESTLWDLHSDPEHHYVNMCFTSAISEVAESSDVNNRTQTSGE
HGWKAGSSERDSPDAQERRNMERKNNALNSSHFDMNKDVVLSMALGFATENILDRSPLSD
DKPVTSPLLVNIVTSDSEKPHKAHKDLTHTELEPLDRSLCELSLRPDCPSDHSDKTKVTN
GISSFVVTTPESVKNIDSCDFAFVDSDSSPSDMTINTFEIYDQNANKMLTAFQMVSTVDS
SGKPVSTPVTAAVKSDLKASELEMLSSTTPSFSVCETKQVSEPSVLKADSLHNEQGDCSP
HYKSSRGGKGGCQAHGNTSFEEEIRLDFGDERHTSFNCELPNHPLNPRNQAGNVIGAEIR
GTELTSSTTNCINSCTPLGLIHRDNDSFTDALCNKDGCVSSELSLRALPLTQACQRPSQS
SDQQSTLFDQSVVDNTRSDADPTGEVGDTLGGGSQTDEEPQPGESENSEGSPALQSDQEM
SFADLHARVAPRSSNSIRPTGSLLHESPSSSSSPTQVTDTSAKPDPSSPPDPNTSPQNAI
PKAGGTHNLVSTTSSSSCSCSSSSTFTSAAISSCSSCPVQSMVDARHTVTPGETQPASGF
LPHQESSPHLVKPLNTSAPPGERKSEGRSVLEKLKSTIHPGRSTQPSAAEVAEREARMTE
ARAQYQNMTNMELISLLLQQEVEVERQRAEAELQGALLEKRDTELKKMKVQVRDLEDYID
KLLVRIMEQTPTLLQKTTVKPNS
NT seq 4572 nt   +upstreamnt  +downstreamnt
atgcctctgataagcctggacgacgacgatcagagatgggttcccacgcatgtaaatgtg
accgtccttcgggcaaggggattgagaacgaagggcaaacacggcagccgctatgtttac
accatcattcagctggggaaagagaaatacaccactggtctggtggagaagggagcggaa
ccggagtggattgaagaatgtgctttcgaactaatgcccgggttgttggagttggaagga
acgggtgcctatcccccgggaagcagcaacttggtcctcacagtgatgcatcgagtgcta
attggacttgacgtgtttcttggtcaaactattgtccccctggacgaggtctttcaagat
ggaatgtgcccgagaaatgaatggctgaagctccactcaaaggcaggcaggccagagaaa
gagcgaggggacttaaatgtgacggtccagttcacccgcaacaacctaacagccagcatg
tatgacctgtccgtcaaagacaagccccgctccgccttcggcaagctcaaggaccgtgtc
acaggccggaagagggaggtggagtcctcctcggccatcgtccccggccgctttgccgcc
ctctcggggtccgcgggccatccgttcagcgagggggcgcagagagaggaggagcaaacg
gaggaacccgtcgtggaggagagggaacgcagaggcagcaaggtcaaggacttcttcggg
aagctgcggaagtcctcggacacgaggtcctgctcatccttggcctcggacagcagcatg
gcgtcctcggcaggagagcccttctgccctccagtggagctctccagcacccccatctac
agcagcagggtggtggccgagagcttccgcggagagacggaggcaggaggaaaagccttc
acacaacaggaccctaaggtgatgacacacaagcgtgcctacagcgacgaggccagcaag
gtcaccaccacctcctcctcctctgtcccccggtcctgccccgcggtggagaccctgaaa
ggccagagcatggtgctgtccaagtcctctctgtgcatcaacggcagccacgtgtactcc
cctgagaccgctggccccgcaggacccaaggctaacccgggcacgctgcctgctcgacgg
gcactgctggagaagtgctctccgctctcgcgctccctccagaacctcacgcgccgcggc
gacgaccctcagaaggccgcccttgccggaggggacggtcggcgctggtccttcgacaaa
accaagaaggaggacggcggcgctgatcaggcagctgccggtgcctcagcccagggcgca
gcgtccgcggacgaatgctccgtgcaggctgcaacagccccggcggaaacggccgataag
gggaagaggctgaggaggactctgttctcgagcgcgaggagcgactcgctgccggccaag
tcggaacacggcccggccagcgctcctcacgagggtcggctcaagggctggtttggctcc
ggcgactcccagaacaagccaagcctggaagtctctcctaaggtagagaacagcccagac
acccccttacccctccatcaccgcctccacaaccagccacagcaccccgctcctagccat
cccgcgcacgttccctcatcccccgccaacggctgtcacgctaaccccttcaccccatcc
ccgcctcccacctccattcccatatccccctccaaccccttcctcacgcgcctgcagagc
aacccatttttcgaggagctcttagccgaagaggctctgaagtctcccccggctgccggc
taccccggctcgcctctctcccagtacgcggcccacctcgcaaacccgagcctccccagc
cctgcccatcgcggtggcatgcggaaggacagggccggcattaagagggagcgccccagg
agcgtggctaggcagaggtccctcccggtgctgttgcctggaagttcagggtcgccagcg
agcagccttcccaactcgtccaccaaccgctcgctttcagagaacattacggagtgggac
gaatcgttcgaggccttcgccgcaagcaggctgaaatcgccaaacgacacgccttctgca
ccaaactcaacaacaaccccggacaattaccacgctgtcccagacattagtggaggtggt
cgaaaaggattcccgcagccaacagaagttcctcccctgccccctcgcagacctgctgga
gcaccctccaaagacagaagctcgcagagttggttgggaagcgccgaagagctcgctgtg
cagagggaggcctgtttcctgacccagtcagacctggcctctcgtcagcatgtgagagag
cgaaaacacaggagaaacaccaaaagttggacccttggcgaagagccccctgcagaaagt
acactctgggatttgcacagcgatcccgaacaccattacgtgaatatgtgtttcacgtca
gcgatatcagaggtcgcagagtccagtgatgtaaacaacagaacacaaacgagtggagaa
catggctggaaggcgggttcatcggagagagacagtcctgatgcgcaagaaagacgcaat
atggaaagaaagaacaacgcacttaattcttctcattttgacatgaacaaagacgttgtc
ctgagcatggcactgggctttgcgacagaaaatatattagacaggagcccactttctgat
gataagcctgtgacctctccactcctcgtcaacattgtcacaagtgatagtgaaaaacca
cacaaggctcacaaggaccttactcatactgaattggagcctttagacaggagcctttgt
gaacttagcctgaggccagactgtccatccgaccattcagacaagaccaaggtgaccaat
gggattagctcttttgtggttaccaccccagagtcagttaaaaacatagacagttgtgac
ttcgcatttgtagactctgacagttccccgtccgacatgactattaacacttttgagatt
tacgaccagaatgctaacaagatgttgacggcttttcagatggtctctaccgtcgattcc
tcagggaagcccgtgtccacgccggtgactgcagcagtgaagtcagacctcaaggcatct
gagttggagatgctctccagcacaaccccttctttctcagtgtgtgaaacaaagcaagtg
tctgaacccagtgtcctcaaagctgactcattgcataatgagcaaggggattgctcacct
cattataaatcctctcgtggtgggaaaggaggttgccaagcccatgggaatacttcattt
gaagaggaaattagactcgactttggagacgagagacacacatcttttaactgtgagcta
ccaaatcaccctttaaatcctagaaaccaggctggaaatgtcatcggtgcagagataaga
ggaacagagttgacatcctccacaacgaattgtattaacagttgtactccactgggtttg
atacatagggacaatgattcattcacagatgcgctatgcaacaaagatggctgtgtgtct
agtgaactctctcttcgagcactgccactgacacaggcctgtcaaagaccaagtcaatcc
tcagaccaacaaagcacactatttgaccagtcagtggtagataacaccaggtcagatgca
gaccccacaggtgaagtgggtgataccctcggtggaggcagccaaactgatgaagaacca
cagcctggagaatcagagaatagtgagggtagtcctgctctccagtcagaccaggagatg
agttttgctgacttgcatgccagggtggccccgagatcctcaaactccatccggcccaca
gggtccctcctgcatgagtcgccttcttcttcgtcctctcccacacaagtcactgacact
agcgccaaacctgaccccagctcaccccccgaccccaacacctcccctcaaaatgccata
cccaaagcaggaggcacacacaatctggtctccaccacctcctcctcctcctgctcctgc
tcctcctcctccaccttcacatccgctgccatttcttcctgttcctcctgccctgtccaa
tccatggttgacgcacggcacactgtcacacctggggagacacagccagctagcggtttc
ctgccccatcaggagagcagcccccacctggtcaagcccctgaacacatcagctccaccc
ggggagaggaagtcagagggacgctctgtgctggagaagctcaagtccaccatccacccg
ggccgctccacccagcccagtgcagcagaggtcgctgagagagaggcccggatgacggag
gcacgagcccagtaccagaacatgaccaacatggagctgatctcgctgctgctgcagcag
gaggtggaggtggagcggcagcgggcggaggcagagctgcagggcgccctgctggagaag
cgcgacacggagctcaagaagatgaaggtgcaggtgcgcgacctggaggactacattgac
aagctgctggtgcgcatcatggagcagacgcccacactgctgcagaaaacaacagtaaag
ccaaattcttag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (10)   

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