KEGG   Carettochelys insculpta (pitted-shelled turtle): 142015304
Entry
142015304         CDS       T11194                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
ciz  Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ciz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    142015304 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ciz03400]
    142015304 (TDP1)
DNA repair and recombination proteins [BR:ciz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     142015304 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 142015304
NCBI-ProteinID: XP_074854861
Position
6:complement(33135257..33250316)
AA seq 605 aa
MSQESEHGKWTVSSSDESTEENDNAEKPSTSSLSCSGLRYPCSEVRKIAHKRKVCPVEFN
DKSFSTVISPAKKQRTSQEGLGWCLSSSDEEPESDSQSKCVPKEAVKEEKLQDFVPEKQP
LQRCGVNELSVSPKSEEHYMVPSEGQDTWDLLNGGNPFRFFVTKVNGIKSKYNSGALHIK
DILSPLFGTLVSSAQFNYCIDVEWLIKQYPLEFRKKPLLIVHGEKRESKAELHAQANPYE
NVRLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIEDDWDQKTQGIWLSPLYPRLP
HGTSGSAGESITNFKSDLINYLMAYNSPTLKEWADIIQEHDLSETRVYLLGSTPGRYQGN
QKEKWGHFRLRKLLREYTSPIPAQESWPVIGQFSSIGSMGADQSKWLCSEFQESLVALGS
SMKTVAKPDVPVHLIYPTVDNVRQSLEGYPAGGSLPYSVQTAQKQLWLHSYFHKWSAETS
GRSHAMPHIKTYMRTSPDFQKISWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLP
SAFGLDAGYFHVKKKMFSGSNEPVTAFPVPYDLPPEPYGSKDRPWIWNIPYTRAPDTHGN
MWVPS
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgtctcaagaaagtgagcatgggaaatggacagtatctagcagtgatgaaagtacagaa
gaaaatgataatgctgagaagccatctacgtcttcattgtcttgtagtggactacggtac
ccatgttcagaggtcagaaaaattgctcacaagagaaaagtctgccctgtggaatttaat
gataaaagtttttctacagtgatttctccagcaaaaaaacagagaacttcccaagagggt
ttaggctggtgcctctcaagtagtgatgaggagcctgaatctgatagtcagtcaaaatgt
gtaccaaaggaagcagtcaaagaagagaagctgcaggactttgtacccgaaaagcaacct
ttacagagatgtggtgttaatgagctttcagtgagcccaaagtcagaagaacattatatg
gtaccaagtgaaggccaggacacttgggatttattgaatggcgggaaccctttcagattc
tttgtcactaaagtcaatggtattaagtctaagtacaactctggagcacttcacataaaa
gatattttgtctcctctttttgggactcttgtatcttctgctcagtttaactattgtata
gatgtggaatggctcataaaacagtatccactggaattcaggaaaaaaccattattaata
gtacatggtgaaaagcgagaatccaaggctgagctacatgcgcaggcaaacccatatgaa
aatgttcgcctttgccaggctaagctggatattgcctttggaacccaccatacgaaaatg
atgttgttgttatatgaagaaggtcttcgagtggtgatacatacatcaaatcttattgag
gatgattgggaccagaaaactcagggaatatggttaagccccctatatccacgactacca
catggaaccagtggttcagctggtgaatctataaccaattttaaatctgacctaataaac
tacttgatggcttataattcccctactctcaaggaatgggctgacatcatccaagagcat
gatctttcagagaccagagtgtatctgcttggatctaccccaggacgatatcaaggcaac
caaaaagaaaaatggggtcacttcaggcttaggaagcttttaagagagtatacatcgcct
attccagcacaagaatcttggccagtgataggacagttctcaagtattggatcaatggga
gctgaccaatccaaatggttgtgttcagaatttcaagaaagcctggttgctctaggcagt
agcatgaagactgtagcaaaacctgatgttcctgttcatttgatttaccctactgtggat
aatgtgcggcaaagtttggaaggataccctgctggtggctctcttccatacagtgtacaa
actgcacagaaacaactttggctgcactcttatttccacaaatggtcagcagaaacctca
ggccgcagccatgctatgccacacattaagacttacatgaggacatctcctgactttcag
aagatttcatggtttttagttacaagtgccaatctttccaaagctgcctggggagctctg
gagaaaaatggcacccaactgatgattcgttcgtatgagcttggagtccttttcctgcct
tcagcatttggattggatgcaggttatttccatgtgaagaaaaaaatgttttcaggaagt
aacgagccagtgacagcttttcctgtgccttatgatcttcccccagagccgtatggaagt
aaagatcgcccatggatttggaatattccttataccagagcacctgatacacatggcaac
atgtgggttccatcataa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (5)   

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