KEGG   Chelonia mydas (green sea turtle): 102941313
Entry
102941313         CDS       T02989                                 
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
  KO
K14327  regulator of nonsense transcripts 2
Organism
cmy  Chelonia mydas (green sea turtle)
Pathway
cmy03013  Nucleocytoplasmic transport
cmy03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cmy00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102941313 (UPF2)
   03015 mRNA surveillance pathway
    102941313 (UPF2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmy03019]
    102941313 (UPF2)
Messenger RNA biogenesis [BR:cmy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     102941313 (UPF2)
   mRNA cycle factors
    P-body specific factors
     102941313 (UPF2)
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 102941313
NCBI-ProteinID: XP_037745242
Position
1:333736663..333934132
AA seq 1306 aa
MPAERKKSASMEEKESSLNNKEKDFSERRSVSSREKAKEDVKVGLKRETLKAPEDKKKKL
EEDKRKKEDKERKKKEEDKIKAEEEQKRKEDEEKKKFEEEEKKKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRET
HAHVSVVISFCRHCGDDIAGLVPRKVKNAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKDESRDSKDAKDNKDVAGTEDLELDMENLDINDDNLELDCGDEAE
DLTKKLLDEQVCSGRREGADSIGAENSDGKQAERKQEDEEANTGSHLKLIVDAFLQQLPN
CVNRDLIDKAAMDFCMSMNTKANRRKLVRALFIVPRQRLDLLPFYARLVGTLHPCMSDVA
EDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELAKFKMFSKNDTLHCLKMLLSDFSH
HHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNP
PPAEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDSEVKDYVICCMINIW
NVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGE
LYNYRMVESAVIFRTLYSFTSFGVNPDGTASPLDPPEHLFRIRLVCTILDTCGQYFDRGS
SKRKLDCFLVYFQRYVWWKKNLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESV
RQVQDLEREFLIKLGIVNDKDSKDSITEGENLEEEEEEEEGGAETEEQSGNESEVNEPEE
EECSDNDDEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQAL
DKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGSGEGESESGDTMPFVMLTRK
GNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQ
RPAPANTNRERRPRYQHPKGAPNADLIFKTGGSHSSHHPVALSTIS
NT seq 3921 nt   +upstreamnt  +downstreamnt
atgccagctgagcgtaaaaagtcagccagtatggaagaaaaagaatcttcattaaataac
aaagaaaaagacttcagtgaaaggcgatcagtgagcagtagagagaaagcaaaggaggat
gtgaaggttggcctgaagagagagactctgaaggcacctgaagataaaaagaaaaaactg
gaggaggataaacggaaaaaagaagacaaggagcgaaagaaaaaagaagaggacaagata
aaagctgaagaagagcagaagaggaaagaggatgaagaaaaaaagaaatttgaagaggaa
gagaaaaagaaacaagaagaggaagtaaaacgtcagcaagaggaggcagctgcacaattg
aaggagaaagaggaagcacatcaactccatcaggaagcttgggagcgccatcaagcaaga
aaggaactccgcagcaaaaaccagaatgcaccagacaaccgccctgaggagaatttcttt
agcaggctggactcgagtctgaagaagaacactgcttttgttaagaagctaaaaactatc
acagaacaacagagggactccttgtctcatgattttaatagcctcaatttaagcaagtac
attgcagaagctgtagcttctattgttgaagcaaagctgaaaatatcagatgtgaactgt
gccgtgcacttgtgttctctctttcaccagcgctatgctgattttgctccatcgctactt
caggtttggaaaaagcattttgaagcaaggaaagaagagaaaactcccaacattaccaaa
ctaagaactgacttgcgtttcattgcagaattgacaatagttgggattttcactgataaa
gaaggtctgtctttaatctatgaacagctaaaaaacattattaatgctgatcgagagact
cacgctcatgtttctgtggtaataagcttttgccggcactgtggagatgatattgctggt
ttggtaccaaggaaggttaaaaatgctgcagaaaagtttaacttgagttttcctcctagt
gagataatcagcccagagaagcaacagcccttccagaatttgttgaaggaatactttaca
tctttgaccaaacacctgaaaagggaccacagagagctgcaaaatattgagagacaaaac
aggcgtattctgcactctaaaggagagttgagtgaagatcgacacaagcagtatgaagaa
tttgcaatgtcctatcagaagctgttggcaaattctcagtctctggctgatctgttggat
gaaaatatgccggatcttccccaagagaaaccaacaccagaggaacatgggcctggcatt
gacatttttacccctggcaaacctggagaatatgacctggaagggggcatctgggaagat
gaagatgctcgaaatttctatgagaaccttattgatctaaaagcttttgtgccagccatt
ttgtttaaagataatgaaaaatgttctcagaacaaggactccagcaaggatgagtctaga
gattcaaaagatgccaaggataataaggatgttgctggtactgaggatttggagttggat
atggagaatttggacattaatgatgataacttggagttagactgtggagatgaagcagaa
gatctcacaaaaaagctgcttgatgagcaagtatgctcaggcaggagagagggagcagat
agcatcggagctgaaaatagtgacggaaaacaagctgaaagaaaacaagaggatgaagaa
gccaatactgggtctcacttaaaactgatagtagatgctttccttcagcaactcccaaac
tgtgtcaacagagacctcatagacaaggcagcaatggatttttgcatgagtatgaacaca
aaagccaatagaagaaagttagtacgagctctcttcatagttcctagacaaaggttggat
ttgcttccattttatgcaaggctggttggcacattgcatccctgtatgtctgatgtagca
gaggacctttgttccatgctgaaaggggatttcagatttcatgtgagaaaaaaggaccag
atcaatattgaaacaaaaaataaaactgtgagatttattggagagcttgccaagtttaag
atgttctccaaaaatgacaccctgcattgtttaaagatgcttctgtcagacttttctcat
caccatattgaaatggcatgtactctgctggaaacgtgtggaagattcctatttagatca
ccagagtctcacttaagaacaagcgttcttttggaacaaatgatgagaaagaaacaagca
atgcatctcgacgcacggtatgtcacaatggtggagaatgcatactactactgtaatccc
cctcctgctgaaaaaactgtgaggaagaaacgcccacctctgcaggagtatattcgtaag
cttctttacaaggatctctccaaggtcaccactgagaaggtcctgagacagatgcgcaaa
ttgccctggcaggactctgaagtgaaagattatgttatatgttgtatgatcaacatttgg
aatgtgaaatacaatagtattcactgtgtagctaacctcttagcagggttggtgctttac
caagaggacgttggaattcatgtcgtggatggagtgctagaggatattcgcctaggcatg
gaggttaaccagccgaagtttaatcagcgacggatcagcagtgccaagttcttgggagaa
ctttacaattaccgaatggtagagtcagctgtaatatttcgaactctatattcatttaca
tcatttggtgtgaaccctgatggtactgctagtccactggaccctccagaacatcttttc
cgaattagactggtctgcaccatccttgatacctgtgggcaatattttgacagaggttcc
agcaaacggaagcttgattgctttcttgtgtactttcagaggtatgtttggtggaagaag
aatttggaagtttggacaaaagaccatccgtttcctattgacattgactatatgatcagt
gataccctagaactgctgagaccaaagataaaactctgcaattctctggaagaatccgtc
aggcaggtacaagacttggaacgagaattcttaataaaactaggcattgtgaatgacaaa
gattcaaaagattctataacagaaggagagaacctggaagaagaggaagaggaggaggaa
ggtggagcagagacagaagaacagtctggaaatgaaagtgaagtaaatgagccagaggaa
gaggagtgctcagacaatgacgatgaggagggtgaggaagaagaggaagagaatactgat
tacctcacagactccaataaggaaaatgaaactgatgaagagaacacagaagtaatgatt
aaaggaggaggacttaaacatgttccttgtgtagaggacgaggacttcattcaggcattg
gataaaatgatgctggagaatcttcagcaacggagtggagaatctgtgaaagttcatcag
ctggacgttgctattcctctgcatctcaagagtcagctaaagaagggtccacctttgggt
agtggggaaggagaatcagagtcgggagacacaatgccatttgtcatgttaactcgaaaa
ggcaacaaacagcagtttaagatcctaaatgtgccaatgtcttctcaacttgctgccaac
cactggaatcaacaacaagctgagcaagaggagagaatgagaatgaaaaagctcactctg
gatattaatgaacggcaagaacaagaggactatcaggagatgttacagtctctggcacag
cgtccagctccagcaaatactaatcgtgaacggcggccacgttaccagcatccgaaggga
gcacctaatgcagatctaatctttaaaactggtgggagccattcatcccatcatcctgtt
gccctctctaccatttcttga

  All links  
Gene (38)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (19)   
   RefSeq(pep) (19)   
DNA sequence (20)   
   RefSeq(nuc) (20)   
Protein domain (2)   
   Pfam (2)   
All databases (79)   

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