KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111805625
Entry
111805625         CDS       T05351                                 
Name
(RefSeq) sister chromatid cohesion 1 protein 4-like isoform X1
  KO
K06670  cohesin complex subunit SCC1
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cpep03036]
    111805625
Chromosome and associated proteins [BR:cpep03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Cohesin complex
    111805625
SSDB
Motif
Pfam: Rad21_Rec8_N Rad21_Rec8 CENP-B_dimeris
Other DBs
NCBI-GeneID: 111805625
NCBI-ProteinID: XP_023546531
Position
LG11:complement(4508001..4517118)
AA seq 1151 aa
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL
LGVVRIYSRKVGYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE
LPDNELYQGNYVDHHVSSREQITLQDTMEGVVYTTSQFGLDERFGDGDASQIGLDLDEEL
FAEKITVKEHDEILDNDVRAPSQSTVLKDTDANMEEILQDPASTTRRVDECNLSSVRDSD
GSLKVEDHSTDLEAVGIENNESRKSNIYGGTTDVLGWSSHNDLDYESTRIMHPEENGHLS
NDPKLEQFSLPTEKTKGDALGGPITGEEMNNGVVINNEPEMTFLDHVDAEYDRTRSSLDA
TAVSPSCSGVTPDLEDFGHKARSDGTYALASEGQLSLKPMDNLVEVISPRKVAPDSTYRE
ESPGRPEVIDAESKEFQEPKDTETQNSFNGEEITSMEKPVLQACNSHGIERDRSSLEGES
YQATDAVTRNLEISEKGGTEVSEDGQASCRDPNKPFGSALSNDICTEISNRSPTSDFPAP
EKLLSVPEGLTETHGDDLPLYSSLDKGNLTEDDGVSGTKLLSGKKRSFTESTLTAQSFNS
AESVGVHRSKRVTESIPDDDDLLSSILVGRRSSVLKMKPSPPVHETISLKRSRPALRVGT
SRKKVLMDDMMVLHGDTIRHQLTSTEDIRRVRKKAPCTRPEISMIQRQFLEDEIFSESIY
SGISKELSSLHAEAFNLSEIRVYEKDPVGASTEAGNNFESAVRPNTTEESATETNPDAVV
DKNDFESQPSRATIQIETQELALECPDLEVQDQQQVTSTENAGLEPIGEREKMDSEAGNI
ADAVDSFDIKELELPSLVIGDKYDDRNASLQMDISCFSPEKILESQSGVEDTFTVESGNV
GLDTVNANDCTEIRDNVDDEKPDHNVSLVTSPRENGAKPAESILDVKLGEIDADGVNTAD
FVCDEKDGASLCLIDGAQMDPQYSPGFDMDFKSTSFNEVVNPSYPEEADLLDIVDTEMTV
LDRPIAEDRGDFEDATVANDIEFLNADDDDEEDEDNAQFAADPSFLENSGWSSRTRAVAR
YLQNLFDRDSVHGRKVLHMDNLLVNKTRKEASRMFFETLVLKTKDYLHVEQERPFDNISL
KPRINLMKSSF
NT seq 3456 nt   +upstreamnt  +downstreamnt
atgttctattctcaattcatattggccaagaaaggaccgcttgggacaatatggatagcg
gctcatttggagaggaagctgcggaagaatcaagtggcggacactgatatcggggtctct
gttgattcaattcttttccccgacgtgccaattgcactgcgattgtccagccatcttctc
cttggggtggtgaggatatattctagaaaggtgggttacctatttgacgattgtagtgaa
gctctgcttaagataaagcaagcgttccgttctactgctgtcgatttaccacctgaagaa
tctactgctccatatcattctatcactttgcccgaaacttttgatctcgatgattttgag
cttccagacaacgaactttatcagggtaattatgttgatcatcacgttagttctcgggag
caaatcacccttcaagatactatggagggtgtagtctacaccacttctcaatttggcttg
gatgaacgtttcggtgacggagatgcttcacaaattggtttagatctcgacgaggagctc
tttgcggagaagatcaccgttaaggaacacgatgagatcttagataatgatgttcgggca
ccttctcaatcaaccgtcttgaaagacacagatgcgaatatggaagaaatcctgcaggat
ccagcatctaccacgagacgagtggatgaatgcaacttgtctagcgtacgggatagtgat
ggttctttgaaagtggaagatcatagtacagatctggaagctgtcggaattgaaaataat
gaatccaggaagtcgaatatttacggtggtactactgatgttttaggttggtcttcccat
aatgatttggattatgagagtacaagaatcatgcatcctgaagagaatggccatctttct
aatgacccaaaacttgaacagttttcgttgccaacggaaaagacgaaaggagatgcattg
ggtggcccaatcacaggagaagaaatgaacaatggagttgtaataaacaatgagcctgaa
atgacctttcttgatcacgttgatgcagaatatgaccgtaccagatcttcgttagatgca
actgccgtgtctcctagttgctccggtgtcacccctgatttggaggactttggccataaa
gctcgttcggatggcacgtatgcattagcatcagagggtcaactatccttaaaacccatg
gacaacttggttgaagtgatctctcctagaaaagttgccccggattcaacgtaccgagag
gaatctcctgggagacctgaggttattgatgctgaatctaaggaatttcaggagccgaag
gacaccgagactcaaaattctttcaatggtgaagaaattacatccatggagaagcctgtg
cttcaggcatgcaattcccatggaatcgaacgcgataggtcatctcttgaaggtgaaagc
taccaggcaactgatgctgtgacgcgaaatttggaaataagcgagaaaggcggtacagaa
gtttcggaagatggacaggctagttgcagggatccgaacaaaccttttggttctgcattg
tctaatgatatttgcacagagatttcgaataggtctccgacctcggacttccctgcaccg
gagaagttgctgtctgtaccagagggccttactgaaacacatggtgacgacttaccgttg
tattcttcactggacaaaggaaacttgactgaggacgacggtgtttctggaactaaactt
ttatctgggaagaagcgaagctttactgaaagtactttaacagcccagagttttaactca
gccgagtcggttggggtgcaccgatctaagagggttaccgagtccattcctgatgatgat
gatttgttatcatctattttagttggaagacgatcttcggttttgaaaatgaaaccgtca
cctcctgtgcatgaaacaatatctttgaaacgttcgcgacctgcactccgagttggcacc
tcaaggaagaaggtgcttatggatgatatgatggttttgcatggagacacaatacgtcac
caacttactagcactgaagacatacgtcgtgttcggaaaaaggcaccttgtactcgtccg
gaaatttcaatgattcagagacaattcttagaagatgaaattttcagtgaatccatatat
tcaggtatctccaaggaactgtcctcattgcatgcagaagcgtttaaccttagtgaaatc
agggtttacgagaaggatcccgtcggtgcttcgaccgaggcaggaaacaatttcgagtct
gctgttaggccaaataccactgaagaaagtgctacagaaacaaaccctgatgcggtggtt
gacaaaaatgatttcgaatctcagccttctcgggctactattcagattgaaactcaagag
ttagccttagagtgtcctgatcttgaggttcaagaccagcagcaagtgacttcaactgag
aatgctggactggaacccattggagagcgagaaaaaatggattctgaagccggaaatatt
gctgatgcagtcgatagcttcgatatcaaggagttagagttgccgtccttagtcatcggg
gataaatatgatgatcgaaatgcttcgttgcagatggatatttcttgcttttctccggag
aaaatattggaatctcagtctggtgttgaagatacttttacggtggaatcggggaatgta
ggtcttgacactgttaatgctaatgattgcaccgagatcagagataacgttgacgatgaa
aaacccgatcacaatgtttcccttgtaacttcacctcgagaaaatggcgccaaacctgcc
gaaagcatcttagatgttaagttaggggaaatcgatgcagatggagtaaatacagcagat
ttcgtttgtgatgagaaggatggagcttctctttgtttaattgatggagctcagatggat
cctcaatattcaccaggattcgatatggattttaaaagtacctccttcaatgaagttgtg
aatccgagctaccctgaagaagctgatttgctcgatattgtggacactgaaatgactgtc
ctcgatcgtccaatagccgaagatcgtggtgacttcgaggatgccacggtggctaatgat
atagaatttttgaacgcagatgacgacgatgaagaagatgaggacaacgcgcaatttgca
gctgatcctagctttctcgaaaacagtggatggtcgtcccgcaccagggctgtggctaga
tatcttcaaaatctctttgatagggactctgtacatgggagaaaggtccttcacatggat
aacttgctcgttaacaaaactcggaaggaagcatcgagaatgtttttcgagacactggtt
ctcaagacaaaggattacctccatgtagaacaggagagaccctttgacaacattagtcta
aagccaagaataaatctcatgaaatcaagtttctga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (10)   

Download RDF
DBGET integrated database retrieval system