KEGG   Corynebacterium ulcerans 210931: Cul210931_0755
Entry
Cul210931_0755    CDS       T03414                                 
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
cuq  Corynebacterium ulcerans 210931
Pathway
cuq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cuq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Cul210931_0755 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cuq03400]
    Cul210931_0755 (mfd)
Enzymes [BR:cuq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Cul210931_0755 (mfd)
DNA repair and recombination proteins [BR:cuq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Cul210931_0755 (mfd)
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID ResIII Cas3-like_C_2 RecG_dom3_C AAA_22 UB2H AAA_30 DUF3638
Other DBs
NCBI-ProteinID: AIU30110
Position
814935..818729
AA seq 1264 aa
MLSTDNAAANSHHPAMLAGLLKVAATDPKIKGLLEHVGDPALHITGIDQSRPWAIGALSH
RAPVLVITATGREAEDLTAELRAMLGDSVAWFPAWETLPHERLSPAADVAGQRARILSHL
NDLRVVVTAARGISQPILQDAEGRNALLLEAEKDYDLEELTRQLVFRAYQHVDLVAKRGE
FATRGGILDIFPTTMDRPVRLEFWGDEITEIREFSVADQRAIPDSSHGAVEIFPARELLV
TPGVAERAGDLALKYQGNPTLQELLSKLAEGTPADGMEALIPALVDTPLVTLPELMPQGT
HVIAVGPEKIRTRVADLQATDAEFLAAGWEAAAMGAAGPVAAQGLDLEASSYRSYESLEI
SARQAGCSWWTFAPSGMFEADDADTLPLDFEAGPTPRGDLSQIEEMMSLLLAHTTAGGRA
AFIAPAKGAIKRMVDRFKEKGIPTKVATPGWEPTPGEVTLYQALSHAGLVFPKVRKKAGT
EALPLVVVTETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKTGDFVVHETHGIGRFLKMT
ERTITSGDETSRREYIVLEYAPAKRGQPADQLFVPMDSLDLLSKYVGGEKPSLSKMGGSD
WKNTKKKARAAVREIAGELVELYAKRQSAPGHPFAPDSPWQHEMEDNFPYVETEDQMMAI
EAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHLSTF
DERMAGFPVNLRGLSRFTSTIEAKETIKGLVDGTVDIVIGTHRLLQTGIQWKNLGLVIVD
EEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTY
VGAQEDKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARDLRDLVPEARIVVAHGQMSEEL
LEQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRER
GYAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAG
VGFDLYVRLVGEAVEAYRALADGKIIDATDDGPKEIRIDLPVDAHIPESYINAERLRLEV
YRKLAASQSNADLILAVEEMEDRYGPLPEEVKRLLAVARLRHLARSAGISDIGVQGTRIK
IHPVELPDSKQVRLKRLLPSATYRAAAKAIQLSFPKEGRNVTDKPLRDVALLQWVADFLS
EMFEIPRISVTGEAVPEKIISVGESPSPGRARTAQRTVTRRSERNDDEDYEDKREARRRK
YRMR
NT seq 3795 nt   +upstreamnt  +downstreamnt
ttgttgtcaactgataacgcagccgctaacagccaccatcccgccatgcttgcggggcta
ctcaaagttgcggcgacagaccccaaaatcaagggactgctggaacacgttggtgaccca
gcgctgcatattaccggcatagatcaatctcgtccctgggctatcggagcgttatctcac
cgagccccagtactcgttatcacggcgaccgggcgtgaagccgaggatctcactgcggaa
cttcgggcaatgctgggggactctgtagcttggttccccgcatgggagactcttcctcac
gagcgtcttagcccagctgccgatgttgcgggtcagagggctaggatcttgtcccatctg
aatgatttgcgcgtggtggtgacagccgcacgcggcattagtcaaccgattcttcaggac
gcagaggggcgtaatgccctccttcttgaggctgaaaaagattatgacttagaagagctc
actcgacagctcgtttttagggcttatcagcacgttgatcttgtggctaagcgcggggag
tttgctacccgaggcggaatcctcgatatattccccacgacgatggatcgacctgttcgc
ttagaattctggggagacgagatcacggagatccgggaattctcagtggctgaccagcgg
gcaatcccggattcttcccacggagctgtggaaattttccctgctcgcgaactcctcgtc
acacccggcgtagcagagcgcgccggcgatttagcgttgaagtatcagggaaaccccacc
ctgcaagaacttttatccaagctggcggagggcactccggcagacggcatggaagcgctt
atcccagcgctcgtagatacccctttggttactcttcctgagctcatgccacagggcaca
cacgtgatagcagtcggcccagaaaaaattcgcaccagggtggcggatttgcaggccacc
gacgcagagttccttgcagcgggatgggaggccgcagcaatgggtgccgctgggccggtt
gctgcccaaggactagacctagaagctagctcttatcgctcgtatgagtctttagaaata
tccgcgcgccaggcggggtgctcatggtggacctttgcgccttccggcatgtttgaagca
gacgatgcggacactcttcccctcgactttgaagcaggtcccaccccgcgcggtgatctc
tctcagattgaagagatgatgtccctgctgctagcccataccaccgcaggcggtagggct
gcctttatcgccccagctaagggtgcgatcaaacgcatggtggataggttcaaagaaaaa
ggcatccccacaaaggtagccacaccgggctgggagcccacgccgggagaagtgactctc
taccaggcgcttagccacgcgggcctcgtctttcccaaagtccgtaaaaaagctggaacc
gaggcattgcctcttgtcgtcgtcacagagaccgatctcaccggtaaccgcgtgggcgat
atcgcaggagcaaagcgtcgtccagctaaacgacgcaaccgcgtagatccgctcgcgctg
aagaccggcgactttgtggtgcatgaaacccacggcatcggtcgattcctcaaaatgact
gagcgcacgattacgtcaggggacgagacctcgcgacgggaatacatcgttctggaatac
gcaccggcaaaacgcgggcagcccgcagatcagctttttgttcccatggactcccttgat
ctcctgagcaaatacgtgggaggcgagaaaccctcgttatccaagatggggggctccgat
tggaagaacactaagaaaaaggcccgcgctgcagttcgggaaatcgccggtgaactcgtt
gagctttatgccaagcgacaatccgcgccgggacacccctttgcacctgattccccctgg
caacatgagatggaagacaactttccatacgttgaaactgaagaccagatgatggccatc
gaggcggtcaaagcggatatggaaaaacccgtccccatggatcgcgtcatcgtaggagac
gtggggtacggcaagacagaagttgctgtgagggccgcttttaaggctgttcaggatggc
aaacaagtggtggtcctcgttcctaccacgttgctagcgcagcagcatctgtccacgttt
gatgaacgtatggccggattcccggtgaatctgcgtggcttaagccgttttacctccacg
attgaagcaaaagaaaccataaaagggcttgtcgacggcaccgtggatatcgtgatcggt
acgcatcgcctgcttcaaacaggaattcagtggaagaacctcggactggtcatcgtcgat
gaggaacaacgttttggtgtggagcataaagaacacatcaaagcactgcgtactcatgtc
gatgtgctgacaatgtctgccacaccgatcccacgaactttggaaatgtctatggctggg
atacgcgagatgtcgaccattttgactcctcccgaggatcgccaccccatcttgacgtat
gttggcgcacaagaagataaacaaatcgctgcagctatccggcgcgaattgttgcgtgac
ggccaggtgttctttgtgcataacaaggtctccgatattgaaaagaaagctagagacctg
cgagacctagtgccggaagctcgtattgttgttgcgcatggtcagatgagtgaggaacta
ctggaacaaactgtccaggggttctgggatcgtgaatttgatgtgctggtgtgcaccacc
atcgtggagactggtttggatattgccaatgccaataccctcatcgtggagaacgcacat
catatgggactttcgcagcttcatcagctgcgcggacgcgtagggcgttcccgggaacgt
ggttacgcgtacttcctgtatcccaagggacaaacactgacggaaaactcctacgaccgc
ctggccaccatcgctcagaacaacgatttgggtgctggtatggcagtggccatgaaagac
ctggaaatgcgaggcgccggtaacgtacttggtgcgcagcaatctggccatatcgcaggc
gtaggatttgatctttatgtgagacttgtcggtgaagccgtggaggcctaccgagccctt
gcagacggaaaaatcatcgatgccaccgatgacgggccaaaagaaatccgcatcgatttg
ccggtggatgcgcacatcccagagtcgtatatcaacgcagaacgactccggcttgaggtg
tataggaagctggcggcgtcgcaaagcaatgccgatctgatactcgcagtagaagagatg
gaggatcgctacggaccattgcctgaagaggtcaaacgcctcctggctgtggcccggcta
cggcacctcgccagatccgcgggcatcagcgacattggtgtgcagggaacgcggatcaag
atccatccggtggaactcccagattccaaacaagtccggcttaaacggctactgccttcc
gcgacataccgcgctgcggctaaggctatccagctgtcctttcctaaggaggggcgcaac
gttaccgataagccgcttcgcgacgtcgccctcctccaatgggtagcagacttcctatca
gaaatgtttgaaataccacgcatctcagttactggggaagccgtgcctgaaaaaatcatc
tccgtgggggaatcacccagccctgggcgggcgcgcactgctcaacgtaccgtcactaga
cggagcgagcgtaatgacgacgaggactatgaggacaaacgtgaagcgcgtaggaggaag
tatcggatgcgttga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (14)   

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