KEGG   Crassostrea virginica (eastern oyster): 111125036
Entry
111125036         CDS       T09197                                 
Name
(RefSeq) pre-mRNA-splicing factor CWC22 homolog isoform X1
  KO
K13100  pre-mRNA-splicing factor CWC22
Organism
cvn  Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cvn03041]
    111125036
Spliceosome [BR:cvn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    111125036
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    111125036
SSDB
Motif
Pfam: MA3 MIF4G MutL
Other DBs
NCBI-GeneID: 111125036
NCBI-ProteinID: XP_022324177
UniProt: A0A8B8D7S4
Position
3:19347879..19359308
AA seq 1560 aa
MPRSEDSDKRKRRKSESSSSSSSSSDSSDSDSDSSSSSSIPAEDRKKDENQSKRSDSESR
SRKSSSLNKSGVESSSRDRKVSSSDEDSKKRRTSSRGSPENERSRSHSSSRVKGQSQSPS
RIKKPSPSESRASSRGEQNTSRHSSTRRSTSRSSSRRGEVRQSSSSPHHPDERSSRNSQR
ERKTSERLTAKSPSSSPPPQKGDRKEKETRTPSSSPPSRSRDRDGEEEAPQTSSPQKVRP
IDASPASASVRSSKSPSHTPPRRDRYDMSKYQEESGGSDSDEDQKNRKKKHDMRNFESEP
ESGECSDSDNERKVKSSVKTDSIPSHYTLGKTLLTLCYRKMEEEDRYHRRGRQRGSYSDR
DVDRRRYSPDRSSRNDRYRDDRRDRRRSPDRRRDDRGRRSMDRKRGGREQDRDREKMDRD
INKAEDGATGEGEKTPKAPRKTKEEEVLALTTRTGGAYIPPARLRAMQASITDKSSEAYQ
RIAWEALKKSINGLINKVNVSNLKFVVQELFQENIVRGRGLVARSVIQAQTASPTFTHVY
AALVAVVNTKFPQIGELILRRLVIQFRRGFKRNDKTLCLSSTQFIAHLVNQQVAHEVLAL
EILTLLLETPTDDSVEVAVGFLKECGQKLTEVTPRGVTAIFERLRNVLHEGKIDVRVQYM
VEVMFAVRKDGFKDHQSVLEELDLIAEEDQFTHLLTLEDEGTGEDILNVFKADPEYEANE
EKYKELKREILDEDSSDEESGSGSGSESDSESEGGEGEEGEKQTIIDQTETNLIALRRTI
YLTIQSALDFEECAHKLLRMELKPGQEVELCNMILDCCAQQRTYEKFFGLLAQRFCMIDK
KYIEPFQNMFREQYETIHRLETNKLRNVAKFFAHLLHTDAISWEVLDVIKLNEDDTTSAS
RIFIKVLFQELSEYLGLPKLNDRLKDPTLQPYFEGLLPRDNPKNTRFSINFFTTIGLGGL
TDDLRQHLMNVKKQVAQQQAQESESSSSSSSDDSSSSSSDSSNSSSDSSSDSSSDDEPQK
RKKSDTKDGKKSRKKYANGDIQEREKRKVKSGSQEKPKRNSERGRSESQENAKRKGREDS
MENVRSKRRGHEDSPDHVRNKRRKRDESPEDLRSNRRVSRDSPDYGRSSKRGDEKSQRNS
RSGQRDGRLDSPERGKTKRETERLDRYDERYSHEDRRRDREDRNERRRNRGDSDDERDSE
KHSDRRRDRRREVYEEENYDRSSKGRRREDYSNGRRAESSDEDHYENRGAKEVERKSFRK
ERDQRENGYRERSLERERERKRSPDRSRDRQRSPDRSRDRQRSPDRSKDRQRSPNRSRDR
QRSPDRSRDRQRSTDRSRDRQRDMNRGRNRSSEREHQRGKEIREERNPRDLDSERRRHEE
DDRRRKYNDSPERPKRGDEEDDREERRQRKEDRENTRNGRGREEDKKSERNKRQEGVERG
PRSSKDERRGNDKEEERSRRNKGSSRQSVDSSSEDSDSSSDSSSSSSDSSSSDSSSSSSS
SSSSPSPPRKRKHSDSERESVRDSVKKRRDSYEYDNKLERSRDHSQRESSVRSRERDRRK
NT seq 4683 nt   +upstreamnt  +downstreamnt
atgcctagaagtgaagactcagacaaaagaaaaaggagaaaatctgagagcagttccagt
agtagttcgtcatctgattcctcagattcagacagcgattcaagttcttcatcaagtatc
cctgcggaagacagaaaaaaagatgaaaaccagtcaaagcggtcagattcagagagcaga
agtcggaagtcctcaagcttaaacaaaagtggggttgagtcatcttctagggacaggaaa
gtttccagttcagatgaggactcaaaaaaaagaaggacaagctccaggggaagccctgaa
aatgagagatctaggtcacattccagctcacgagttaagggtcaatcccagtcgccaagc
agaataaaaaagccctctccttctgaatccagagcaagctccaggggtgaacaaaataca
tctcgtcattcatcaactcggcgatctacttctcgttcatcatccagacgtggggaagtg
aggcaatcatcctccagtccacatcatccagatgaaagatcttcaagaaattcacagaga
gaaaggaaaacatctgaaaggcttacagcaaagtctccctcgtctagtcctccccctcaa
aagggtgatagaaaggaaaaagagactaggacaccatcgtcaagtccaccaagtaggagt
cgggatagagacggagaggaggaagcaccccagaccagctcaccccaaaaggtcagacct
atagatgcctcgccagcatctgcttctgtcagaagttccaagtcgccaagtcacacccca
ccacgcagggaccgctatgatatgtcaaagtatcaggaggaaagtggagggtcagattct
gatgaagaccagaagaatcgaaagaagaaacacgacatgaggaactttgagagcgagcct
gagagtggggaatgctcagactcggacaacgaaaggaaagtgaagagttctgtcaagacg
gatagtatcccatctcactacacactgggcaaaacactgctaacgttgtgctacaggaaa
atggaggaagaagatagatatcacagacgtggaaggcagcgtggctcttactctgacaga
gatgtggaccgtcgtagatacagccctgacaggagtagtcggaatgatcgttatagggat
gacagacgagatcgcaggcgatcaccagacagaaggagagatgacagaggtcgaaggtca
atggacagaaagagagggggtagagagcaggacagggacagagagaagatggaccgagat
atcaataaagctgaagatggtgccacaggggagggagaaaaaacccccaaagcacccagg
aagacaaaggaggaggaagtgctggcactgaccacccgaacgggaggggcatatatacct
cctgccagactgcgagcgatgcaggcgagcatcaccgacaagtcaagtgaagcctatcag
agaatcgcctgggaagccctgaagaagagcattaacggtctcatcaacaaggtcaacgtc
tccaacctcaagtttgtcgtccaggaactgtttcaggaaaacatcgtcaggggaagaggt
ttggtggcacggtcggtcattcaggcccagactgcctctcccacatttacacatgtgtat
gctgccctggtggctgtggtcaacacaaagtttccacaaattggggagttgatcctgcga
cgtcttgtgattcagtttcggcgaggtttcaagagaaatgataaaacactctgtctctca
tctacccaatttattgctcatttagtcaaccagcaagtggcccatgaggttttggcatta
gaaatcctgaccttattactggagacccccacggacgactcagtggaggtggcagtgggc
ttcctgaaggagtgtggtcagaaactgactgaggtcacacccaggggggtcacagctatc
tttgagaggctgagaaacgtcttgcatgagggaaaaatagatgtcagggtacagtatatg
gtggaggttatgttcgccgttcgcaaggacggctttaaagaccaccagtctgtcctggaa
gaattagatctcatcgccgaggaggaccagtttacacacttgctgactttggaggatgag
ggcaccggggaggacatcctcaatgtattcaaggctgatcctgaatatgaagccaatgaa
gaaaagtacaaagaattgaaaagagagatcctggatgaggacagttctgatgaggagtca
gggagtggatctggttcagagagtgacagcgaaagtgaaggtggcgaaggtgaagaggga
gaaaagcagaccattatagaccagaccgagaccaacctaattgctctgaggagaacgatc
tatcttacaatccagagtgccttagactttgaggagtgcgctcacaaacttctgcgaatg
gaactgaaacctggtcaagaggttgagttgtgtaacatgattcttgattgctgtgcacag
cagcgaacgtatgagaagttttttggactacttgcacagagattttgcatgattgacaag
aaatacattgagcctttccaaaacatgtttagagaacaatatgaaacaattcacagattg
gaaaccaataaactcaggaatgtggccaagttctttgcccatcttcttcacacagatgcc
atttcatgggaggttctggacgtcatcaaacttaatgaggatgacactacctctgccagt
cgaattttcatcaaagtcctgttccaggagttgtcagagtatctaggccttcccaagctc
aatgatagactcaaagatccgacactccaaccttactttgagggacttctgcccagggac
aacccaaaaaacacacgattctccatcaactttttcaccacaattggtcttggaggactc
acagatgatctcagacagcacttaatgaatgtgaagaagcaggtagctcagcaacaagcc
caggaatctgagagctcctcttcctcctcatctgatgattcatcctcttcttcctcagac
agcagtaactcctcatcagacagttcctcagatagttcatctgatgatgagccccaaaag
aggaagaagtcagatactaaagacggaaagaaatctaggaaaaaatatgccaatggagac
atacaggaaagagagaaaaggaaggtcaaaagtggaagtcaagaaaaaccaaaacgtaat
agcgaaagaggtcgtagtgaaagtcaagaaaatgcaaaaagaaaagggcgggaggatagc
atggaaaatgtcagatccaagagaagaggacatgaagatagtcccgatcatgttagaaat
aaaagaaggaagcgagatgaaagtccagaagatttacggtcgaacaggagggtgagcagg
gatagtcctgattatgggcggtctagtaagagaggtgatgagaagagtcaacgaaactct
aggtccggacagagagatggtagactggacagtccagaaagagggaaaaccaagcgagaa
actgaaaggttggatagatacgatgaaaggtattctcatgaagacagaagaagagataga
gaggatagaaatgaaagacgaagaaacagaggtgatagtgatgatgaaagagacagtgaa
aaacacagtgatagaagaagagataggagaagggaagtttatgaagaagagaattatgat
agatcatccaagggaagacgaagagaagattactctaatggaagacgagcagagagttca
gatgaagatcattatgaaaatcgtggagctaaagaggtagaacgaaaaagtttcaggaag
gagagagatcagagagaaaatggatacagagaaagaagtttagaaagagaaagagaaagg
aagaggagtccagataggagtagagataggcagagaagtccagataggagtagagatagg
cagagaagtccagataggagtaaagataggcagagaagtccaaataggagtagagacaga
caaagaagtccagataggagtagagatagacaaagaagtacagataggagtagggatagg
cagagagatatgaacagaggtaggaacagaagttctgaaagagaacatcaaagggggaaa
gaaattagagaagagaggaatccaagagatctagattcagagaggagaagacatgaagag
gatgatagaaggaggaaatacaatgacagtccagagagaccaaagcgtggtgatgaagag
gatgatcgagaggaaagaagacagagaaaagaggatagagaaaatactaggaatggcagg
ggaagagaagaagacaaaaaatcagaaaggaacaagagacaggaaggtgtagagagagga
cctaggagttccaaagacgagagaagaggaaatgacaaagaggaggagaggagcagaaga
aataaaggaagcagcagacagagtgtggattcctccagtgaggacagcgactcctccagc
gattccagttccagcagttcagactcctcctccagtgacagctcctcatcttcctcctcc
tcctcctcatccccctcaccaccgaggaagaggaagcattcagattcagagagagagagt
gtaagggattctgttaaaaaacgcagagattcgtatgaatatgataacaaacttgaaaga
agcagggatcattctcagagggaaagtagtgttcgcagtagggagagagaccgtcgaaag
tga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (10)   

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