KEGG   Dictyostelium discoideum (cellular slime mold): DDB_G0272384
Entry
DDB_G0272384      CDS       T00245                                 

Definition
(RefSeq) ATP-dependent DNA helicase RecQ family protein
  KO
K10901  bloom syndrome protein [EC:3.6.4.12]
Organism
ddi  Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ddi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    DDB_G0272384
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ddi03032]
    DDB_G0272384
   03400 DNA repair and recombination proteins [BR:ddi03400]
    DDB_G0272384
Enzymes [BR:ddi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.12  DNA helicase
     DDB_G0272384
DNA replication proteins [BR:ddi03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    DDB_G0272384
DNA repair and recombination proteins [BR:ddi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     DDB_G0272384
    Bloom's syndrome complex (BTR)
     DDB_G0272384
   FA (Fanconi anemia) pathway
     DDB_G0272384
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind Phage_portal_2
Other DBs
NCBI-GeneID: 8618350
NCBI-ProteinID: XP_645178
dictyBase: DDB_G0272384
UniProt: Q55A06
Position
2
AA seq 973 aa
MDNRPMNKLISRSIFNKTNERSTLSLFQSLNYYYKRDFTSEINKTNNNFDNCQNNEEGYN
VINNNKKNKNNSNNNNVEYNENDNSNNNNNNNKNEINNNEIDFDWSMKAKKKIKKSVLTG
EDRLDKKTKDLKYLNSIGLLVKLKSTTISNNEISDNSNNNNLKDKENDEIETIALIDEDN
EISTIKKKKKIKTNKNSYDDDNIDNESNDYTTTIIQNEDHNTFSSTTTTTRGSIKNKRNK
SLKKEEIQKQHEENQDNNHDKISIEYDENELKKTYNLDENGDNIVEMSPAFKNNNLLIKK
SKNKKTKQSNIDIDNDNDNVDNYIDNDDDDETIDKPKKSKSKSTTKSKKINVKKQDDENE
EEEEDEDEEKEFKSIEISKLKKKKKEIKDGEYLNIKNVYKEWLESPIVIKLSNDDSCFTN
SKIKINPKSFTIKSDDDDDGNGNGNGNGNDNDKNNLKLKREWHELVETCNRDIFGNKEFR
NLQIEAINSILHDRDTFVSLPTGGGKSLCFQIPSIVDHRGVTFVISPLLALMQDQVHKLK
SLGIPAESINSSGSQRENRDVLDQLLNGETCKLKLIYITPERLAQSEFLHLLDQLYDQGR
LRRLVVDEAHCISEWGHSFRPKYRLISTFRDRFPSVPISAFTASATPNVEIDIKNSLKMV
NPITINSSFLRPNLLYQVRQKQSDEESLLKDIYNFISFKYPNSTGIIYCATVRECEIVAD
YLSERGLSSNFYHAKLSNTQRSKLQKDWTNGEFKIVCTTIAFGMGIDKGDTRFVIHHSMP
QSMESYYQQTGRAGRDGKHSDCLLFYNKSDLMRFKHIISLNQPKDPFNAFSNYNGVGIGD
IGGEHLILDNDGNYISNYSSDESQYMDTIKNKIQQTSTKLEMLDSVASFCSTQSKCRRVT
LLNYFGENSKSCGNMCDICISNSNSNSNNRSKAKQNQIDYSERIYNRNSYSISSFKNKKK
KSHVSYDNDNDVD
NT seq 2922 nt   +upstreamnt  +downstreamnt
atggataatcgacctatgaataaattaattagtaggtctatatttaacaaaacaaatgaa
agatccacattatctttatttcaatcgttaaattattattataaaagagatttcacatct
gaaattaataaaaccaataataatttcgacaattgtcaaaataacgaagaaggttacaat
gtcattaataataataaaaaaaataaaaacaatagtaataataacaatgtagaatataat
gaaaatgataatagtaataataataataataataataaaaatgaaattaataataatgaa
attgattttgattggtcaatgaaagctaaaaaaaaaattaaaaaaagtgtattaactggt
gaagatagattagataaaaaaacaaaagatttaaaatatttaaattcaattggtctatta
gtcaaattaaaatcaactacaatatcaaataatgaaatatcagataatagtaataataat
aatttaaaagataaagaaaatgatgaaattgaaactatagctcttattgatgaagataat
gaaatatcaacaattaaaaagaaaaaaaaaataaagactaataaaaatagttatgatgat
gataatattgacaatgaatcaaatgattatacaactactataatacaaaatgaagatcat
aatacttttagttcaacaactactactactagaggtagtataaaaaataaaagaaataaa
tcattaaaaaaagaagaaattcaaaaacaacatgaagaaaatcaagataataatcatgat
aaaatatcaattgaatacgatgaaaatgaattaaaaaaaacatacaatttagatgaaaat
ggtgataatattgttgaaatgagtcccgcttttaaaaataataatttattaataaagaaa
tctaaaaataaaaaaactaaacaatcaaatattgacattgacaatgacaatgacaatgtt
gataactatattgacaatgatgatgatgatgaaaccattgacaaacctaaaaaatcaaaa
tcaaaatcaacaactaaaagtaagaaaataaatgtaaagaaacaagatgatgaaaatgaa
gaagaggaggaggatgaagatgaagaaaaagaatttaaaagtattgaaattagtaaatta
aaaaaaaagaaaaaagaaattaaagacggagaatatttaaatattaaaaatgtatataaa
gaatggttagaatcaccaattgttattaaattatcaaatgatgatagttgttttacaaat
tctaaaattaaaattaatccaaaatcatttacaattaaaagtgatgatgacgatgatggt
aatggtaatggtaatggtaatggtaatgataatgataagaataatttaaaattaaagaga
gaatggcatgaattagttgaaacatgtaatagagatatatttggtaataaagaatttaga
aatttacaaattgaagctataaattcaattttacatgatagggatacatttgtaagttta
ccaactggtggcggtaagagtttgtgttttcaaattccatcaatcgttgatcatagaggt
gtgacatttgtaatatcaccattgttggcattgatgcaggatcaagtgcacaaattgaaa
tcattgggtattcccgcagagtcaatcaatagttcgggtagtcagcgtgagaatagggat
gttttagaccaattattaaatggtgaaacttgtaaattgaaattaatttatattacacct
gaaagattggcacaatctgaattcttgcatttgttagaccaattgtacgaccaaggtagg
ttgagaagattagtggtggacgaagctcattgtatctctgaatggggccacagtttcagg
ccaaagtacagactaatttccacatttcgtgatcgattcccctctgtaccgatatcggca
ttcactgctagtgcaacgccaaatgttgaaattgatattaaaaactcactaaaaatggtt
aacccaattacaatcaattcaagttttctccgaccaaatttactataccaagttagacaa
aagcaatctgatgaagaatcattactaaaggatatttacaatttcattagttttaaatac
ccaaattcaactggtatcatctattgtgcaaccgttagagaatgtgaaattgttgcagac
tatctaagtgaacgtggtttatcatctaatttttatcatgctaaactcagtaatactcaa
cgttcgaaattacaaaaagattggaccaatggtgaatttaaaatagtttgtacaacaatt
gcatttggtatgggtattgataaaggtgatacaagattcgtcattcatcattcaatgcct
caatcaatggaatcctattatcaacaaactggtagagctggtagagatggtaaacatagt
gattgtttattattttataataaatctgatttaatgagatttaaacatataatatctctt
aatcaaccaaaagatccattcaatgcttttagtaattataatggtgttggtattggtgat
attggtggtgaacatttaatattagataatgatggtaattatattagcaattattcatca
gatgaatctcaatatatggatactattaaaaataaaattcaacaaacatccacaaaactt
gaaatgttggacagtgttgcttcattttgctcaactcaatcgaaatgtcgtcgtgtaact
ttattaaattattttggtgaaaactcaaaatcttgtggaaatatgtgtgatatttgtatt
tcaaattcaaattcaaattcaaataatagatcaaaagcaaaacaaaatcaaatcgattac
tctgaaagaatttataatagaaattcttattcaatttcatcttttaaaaataaaaaaaag
aaatcacatgtatcttatgataatgataatgatgttgattaa

KEGG   Dictyostelium discoideum (cellular slime mold): DDB_G0292130
Entry
DDB_G0292130      CDS       T00245                                 

Gene name
blm
Definition
(RefSeq) ATP-dependent DNA helicase RecQ family protein
  KO
K10901  bloom syndrome protein [EC:3.6.4.12]
Organism
ddi  Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ddi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    DDB_G0292130 (blm)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ddi03032]
    DDB_G0292130 (blm)
   03400 DNA repair and recombination proteins [BR:ddi03400]
    DDB_G0292130 (blm)
Enzymes [BR:ddi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.12  DNA helicase
     DDB_G0292130 (blm)
DNA replication proteins [BR:ddi03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    DDB_G0292130 (blm)
DNA repair and recombination proteins [BR:ddi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     DDB_G0292130 (blm)
    Bloom's syndrome complex (BTR)
     DDB_G0292130 (blm)
   FA (Fanconi anemia) pathway
     DDB_G0292130 (blm)
SSDB
Motif
Pfam: RQC DEAD RecQ_Zn_bind Helicase_C HRDC
Other DBs
NCBI-GeneID: 8628529
NCBI-ProteinID: XP_629849
dictyBase: DDB_G0292130
UniProt: Q54DM3
Position
6
AA seq 1259 aa
MDKSNYNQLLSDFLDVSKANENTNIQTNNTNGGCGNNNNTTFDDCDEINEKSTIASTGCK
DIKNIFSGVVPKVTYLPPKITPISTPNVILNSPTHPTSPSNININTNTTNTNITNSKITT
TFMNTATTTTTNSNIKNEIDEDDNGFDDSLITKRRPIRKNSSLHLNDDDGDDDIVDTNNI
PPPPSSSKTTPTITPSLPTKKIPAIFHSPIVNKTTNNNNNYNNNNNNNTNSINSNIYNFV
NKNSSDLVKTIKSDLYDLGIKKKNLKNQKKGSSDDEKQRISDELQEIKKSKKELIKLLEN
ALNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNYNNISNNYSNSNNVVYNSNSTNNINNNS
NNSNNSNSTSPTFKSSTIVQPPKVTPNYTSDISLDDDNYYPNDIDEYTHHSTTTTTTTTS
KTNNDNNNNYDNDIIDLDEYDGFSGFDSGYENGTDSAMFDDEDVVVNEQKPTNNHFSTNS
FNNSNNNNNNVFSVANFNGDNSRFKGNFPWSQKIIDINRSMFGFHVFRENQREIINSTLE
GNDTFVLMPTGGGKSLCYQIPALYQKGLTIVISPLISLINDQVEFLETLGYPAAALSSAV
SSDAAIDVYKDIRSNSPKIRLLYLTPERVVKSDSLIEILANLDQKGLFSRIVIDEAHCVS
QWGHDFRPDYKELSILRRKFPKVPILALTATATERVRNDVIYNLSMRNPVCFKQSFNRPN
LIYQVLKKTKQVVDDMSKFIHSTYPDKSGIVYCISKYDCENVAKRLRELKISAAHYHAGL
ENDERAKVQANWQKGRIKVIVATIAFGMGINKADVRFVIHHSVPKSLEGYYQESGRAGRD
GGISHCLLYFSWADKLRNDLLIQNSFTSGQGSSHNTRETRDSLNKMVNYCENETDCRRQL
QLAYFGENFEKSGCKKTCDNCISTLETTRKDVTEESKNLVKTIKALGSDTSNLIIDIFKG
SKGKKVLEKCAQSGITNLHGIGKNWQKHEIERILHQLLRDNILKETISQNPYGGTYSHLS
VGSYADNLLRNQKNVTLSFRSTPAKKTVSAAKKKKSSKNNEDDEEEEDEVPTNFVIIQNK
TTKTDANLVARLEKLRQDLALIENIQETYIFSRDTIDDILRVKPKTIKELKGLTGLPSQK
IDRYGKSIIQAINDFLSDTPYSFDKSSFQKIPFNSTQTSSYFSKSSSNPPHVHTISDDSE
FDTDTTNFVIDNDTVDENENFDFEIDDNDYLDQPQQQQSNKRKQSSTSVTSTKSSRVKK
NT seq 3780 nt   +upstreamnt  +downstreamnt
atggataaaagtaattataatcaacttttgtcagattttttggatgtatcaaaagcgaat
gaaaatacgaatatacaaaccaataatacaaatggaggttgtggtaataacaacaacaca
acttttgatgattgtgatgaaattaatgaaaaatcaacaatagcttcaactggttgtaaa
gatattaaaaatatattttcaggtgtggtgccaaaggtaacttatttacctcctaaaata
actccaatatcaacaccaaatgttattttaaattcacctacacatcctacatcaccttca
aatataaatataaatacaaacacaacaaatacaaatataacaaactcaaaaataacgact
acatttatgaatacagctacaactacaactacaaattcaaatataaaaaatgaaattgat
gaagatgataatgggtttgatgattcattaataacaaaaagaagaccgattagaaaaaac
tcatctttacatttaaatgacgatgatggtgatgatgatatagttgatactaataatata
ccaccaccaccatcatcatcaaagacaacaccaaccataacaccttcattaccaaccaaa
aagattccagcaatatttcactcaccaattgtaaataaaacaacaaataataataacaat
tataataataataataataataatacaaacagtattaacagtaatatatataattttgta
aataaaaactcttcagatttggttaaaactattaaatcagatttatatgatttgggaata
aagaaaaagaatttgaaaaatcaaaaaaaaggttcatcggatgatgagaaacaaagaata
tctgatgaactccaagaaatcaaaaaatcaaaaaaagaattaattaaattacttgaaaac
gctttaaataataataataataataataataataataataataataataataataataat
aataataataataataataataatagtagtaataattataataatattagtaataattat
agtaacagcaataatgtagtatataatagtaactcgacgaataatattaataataatagt
aataatagtaataatagtaattcaacatcaccaacatttaagagtagtacaatcgttcaa
cctccaaaagtaacaccaaactatacatctgatatatcacttgatgatgataattattat
ccaaatgatatcgatgaatatacacatcactcaacaacgacaacgacaacaacaacatca
aaaactaataatgataataataataattatgataatgatataattgatttagatgaatat
gatggttttagtggttttgatagtgggtacgaaaatggaaccgatagtgcaatgtttgat
gatgaagatgttgtagttaatgaacaaaaacctacaaacaatcacttttcaacaaactct
tttaataatagtaataataataataataatgttttttcagttgcaaactttaatggtgat
aatagtagatttaaaggtaatttcccatggagtcaaaagattatagatataaatagatca
atgtttggttttcatgtttttagagagaatcaaagggaaattattaattcaacattggaa
ggaaatgatacatttgtgttaatgccaactggtggtggtaaaagtttatgttatcaaata
ccagcactttatcaaaagggacttaccattgtaatttcaccattgatttcattgattaat
gatcaagtggaatttttagagacattgggataccctgccgctgcattaagtagtgcggtt
tcatcagatgcagccattgatgtctacaaagatattagatcaaattcaccaaagattcgt
ttactatatttaacacctgaaagagttgtaaagagtgattcactcatagagatattggcc
aatctagatcaaaagggtttattctcaagaattgtaattgatgaagcacattgtgtatcg
caatggggtcacgattttcgtccagattataaagaactctcaatattaagaaggaaattc
ccaaaggtaccaatacttgcattgacagcaacagctacagaaagagttagaaatgatgtt
atctacaatcttagtatgagaaatccagtttgtttcaaacaaagtttcaatagacccaat
ttaatttatcaagttttaaagaaaaccaaacaagtggttgatgacatgtccaagtttatt
cattcaacttatcctgataaatctggtatcgtctattgtatttcaaagtatgattgtgag
aatgttgcaaagagattaagagaattgaaaattagtgcagcccattatcatgcgggttta
gagaatgatgaaagagctaaagttcaagctaattggcaaaagggtagaattaaggttatt
gttgcaaccattgcatttggtatgggtattaacaaagctgacgttagatttgtcattcat
cattcagttcctaaatcattggaaggttactatcaagagagtggtagagctggtcgtgat
ggtggtatttctcattgcttattatacttttcgtgggctgataaattaagaaacgatctc
ttgattcaaaatagttttacaagtggtcaaggtagttcccacaatactagagaaactaga
gacagtttgaataaaatggtaaactattgcgagaatgaaaccgattgcagacgtcaatta
caattggcttactttggtgaaaattttgaaaagagtggatgtaaaaaaacctgtgataat
tgtataagcactttggaaaccactagaaaggatgtcactgaagaatcgaaaaatcttgta
aaaaccatcaaagcattgggttcagatacatcaaatttaatcattgacattttcaagggt
tcaaaaggtaaaaaggttttagaaaagtgtgcacaatctggaattaccaatttacatggc
attggtaagaattggcaaaaacatgaaattgaaagaatattacatcaattacttagagat
aatattctaaaggaaactattagtcaaaatccttatggtggaacttattctcatttatca
gtggggagttatgctgataatttactaagaaatcaaaagaatgtaacactatcatttaga
tcaacacctgccaaaaaaactgtatcagccgccaaaaagaagaaatcaagtaaaaataat
gaagatgatgaagaagaagaagatgaagtcccaactaatttcgttataattcaaaataaa
accactaaaaccgatgctaatcttgttgctcgtttggaaaaacttcgtcaagatcttgct
ttaattgaaaatatccaagaaacctatatcttctcacgtgatactatcgatgatattctt
agagttaaaccaaaaactattaaagaattaaaaggtcttacaggtcttccatctcaaaaa
attgatagatatggtaaatctatcattcaagccattaatgattttctctctgatacacct
tattcatttgataaaagtagttttcaaaaaataccatttaattcaactcaaacttcatct
tatttttcaaagtctagtagtaatccaccacatgttcacactataagtgatgactctgaa
tttgatactgatacaactaatttcgttattgacaatgatactgttgatgaaaatgaaaat
tttgactttgaaattgatgacaatgattatttagatcaaccacaacaacaacaatcaaat
aaaagaaaacaatcatcaacatctgtaacctcaacgaaatcaagtagagttaaaaaataa

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