KEGG   Dictyostelium discoideum (cellular slime mold): DDB_G0284713
Entry
DDB_G0284713      CDS       T00245                                 

Gene name
polB
Definition
(RefSeq) DNA polymerase X family protein
  KO
K02330  DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
Organism
ddi  Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ddi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    DDB_G0284713 (polB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ddi03400]
    DDB_G0284713 (polB)
Enzymes [BR:ddi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     DDB_G0284713 (polB)
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.-  
     DDB_G0284713 (polB)
DNA repair and recombination proteins [BR:ddi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     DDB_G0284713 (polB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    X-family DNA polymerases
     DDB_G0284713 (polB)
SSDB
Motif
Pfam: DNA_pol_B_palm HHH_8 DNA_pol_B_thumb DNA_pol_lambd_f HHH_5 HHH NTP_transf_2
Other DBs
NCBI-GeneID: 8624738
NCBI-ProteinID: XP_001134542
dictyBase: DDB_G0284713
UniProt: Q1ZXF2
Position
4
AA seq 509 aa
MDYKIKNKKRERSSDDDDENSSGNEKIVNKKQHKIETITKPTKPLSTLAVSTGCNKNQKL
TDIITELSIFEKNKGLQHKYSAYRKAAQSIRAHPKEITSGIEAQKLDGVGKKIAKKIQEI
IDTGELKKLNNQLKDETLTSIGEISKVSGIGPKAAQKFYDEGIKSIKDLWKIKDRLTHHQ
QIGLKYFNEIEQKVPRNEIEQFEELVRQALLKIDKKIIYETCGSYRRGLPSSGDVDILLS
HPNYTLKMKDKKETFHIVEKLVDSLKKSGIIIDDLSLGPFKYMGICKLPSNIKLDNIDCK
KEKNDHYSDNDDDEKEEEGNDNDDDDDDDCSTKKINSNNEEDATSDGEEFEDDSDATEPE
DESKRLPPKKILKKKTLKLEKENIKKPKTTTKTTTSSKNSENNNNNNNNNKTINNNNNNF
NTHIARRIDFKLIPIESYYFGLLHNTGSDEFNRQMRAIALSKGYTLSEYSINKFSKESGK
DDQIIPVNSEEEIFKIIGMKYYPPQERKL
NT seq 1530 nt   +upstreamnt  +downstreamnt
atggattataaaattaaaaataaaaagagagaacgttcaagtgatgatgatgatgaaaat
agtagtggaaatgaaaaaattgtaaataaaaaacaacacaaaattgaaacaataacaaaa
ccaacaaaaccattatcaacattggcagtttcaacaggttgcaacaaaaaccaaaagtta
acagatattataacagaattaagtatttttgaaaagaataaaggattacaacataaatat
tcagcatatagaaaagcagctcaatcaattagagctcatccaaaagagattacttctggt
attgaagctcaaaaattggatggagttggaaaaaagatagcaaagaaaatccaagaaatt
attgatacaggtgaattaaagaaattgaataatcaattaaaagatgaaacattaacatca
attggggagatttcaaaagtctctggtattggtccaaaagctgctcaaaaattttatgat
gaaggtataaaatcaattaaagatttatggaagattaaagatagattaacacatcatcaa
caaattggtttaaaatattttaatgagattgaacaaaaagtaccaagaaatgaaattgaa
caatttgaagaattagttagacaagcattattaaaaattgataaaaaaattatttatgaa
acatgtggtagttatcgtagaggtttaccatcatcaggtgatgttgatattttattaagt
catccgaattacacattaaagatgaaagataaaaaagaaacatttcatattgtagaaaaa
cttgttgacagtttaaagaaatctggaataattattgatgatttatcattaggtccattt
aaatatatgggtatatgtaaattaccatcaaatattaaattggataatattgattgtaaa
aaagaaaagaatgatcattattcagataatgatgatgatgaaaaagaggaggagggtaat
gataatgatgatgatgatgatgatgattgttcaactaaaaaaataaatagtaataatgaa
gaggatgcaacaagtgacggagaagaatttgaagatgatagtgatgcaactgaacctgag
gatgaatcaaaacgattgcctccaaagaaaatattaaaaaagaaaacattaaaattagag
aaagaaaacataaagaaacctaaaacaacaacaaaaacaacaacatcaagtaaaaatagt
gaaaataataataataataataataataataaaaccattaataacaataataataatttt
aacacacacattgcaagacgtatcgattttaaattaattccaattgaatcatattatttt
ggtcttttacacaatacaggaagtgatgaatttaatagacaaatgcgtgccattgctctt
tcaaaagggtacacattatctgaatatagtataaacaaattttcaaaagagtctggaaaa
gatgatcaaattattccagtgaattcagaggaagagattttcaaaataattggtatgaaa
tattaccctcctcaagaacgtaaactttaa

KEGG   Dictyostelium discoideum (cellular slime mold): DDB_G0284739
Entry
DDB_G0284739      CDS       T00245                                 

Gene name
gxcFF
Definition
(RefSeq) IQ calmodulin-binding domain-containing protein
  KO
K02330  DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
Organism
ddi  Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ddi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    DDB_G0284739 (gxcFF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ddi03400]
    DDB_G0284739 (gxcFF)
Enzymes [BR:ddi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     DDB_G0284739 (gxcFF)
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.-  
     DDB_G0284739 (gxcFF)
DNA repair and recombination proteins [BR:ddi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     DDB_G0284739 (gxcFF)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    X-family DNA polymerases
     DDB_G0284739 (gxcFF)
SSDB
Motif
Pfam: RhoGEF IQ PH
Other DBs
NCBI-GeneID: 8624746
NCBI-ProteinID: XP_638377
dictyBase: DDB_G0284739
UniProt: Q54P81
Position
4
AA seq 741 aa
MGNSFSFEPYGEYDVENVEGNENNVNVKSKINLSSDLFKEEEEERKKYLLSIKELENKFK
LSAQESRKLKSHKSAILIQKVWRGHSQRKKWSLFLKKSQVIKELLITERDYVQFLKVIVN
VYMVPLKELVSGKDSTISSATNQKILKNIKNDGGQNLGLNLEQPPLTSEEIKIVFSQIEV
ILLYNSKLLEKLSTRITNDRWNYYQKIGDVFLEFTHFLKVPYSHYITNFPSVLKVLESAS
KRPSYVLFIQECKHLPEVGKRDLQSFVSMPVQRCPRYVLLLRELLKFTPSSDHDFKNIVS
ALQGMETIADLINRQMKEEEISREIIAINEKLTPKVKNLIEPHRRLIKEGDVKIYKADGN
DHDTFTGTIRPSSIWKIQSPRFRYIYLFNDSFIVSKKTKTLYKVEQFVNLEYSTVIDHSK
SIKIVETIPSDDQLNKYNVDNNSCNNLENSCNNSVLNDSNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNSVSDLNNVNSNNINNANNNVNNPNSNNNNNINNTNNNNNGTTNRKMS
FSSFIENSIKSGRESFRSSNSSDGDRYYFKLHTLDCTLVICLPNEEEKEQWRSAFVNVIN
RVTENVLSFNPKWSTNPGLVDSSGGGSSNSYGSGSADGSYATNLNIASFTSPSLSRMSPY
HSKLSSPMRGTLLTNDNFSLKQSIQELLSLSKPIKGMEGSSTISSNYSSSSSNSTMSSSI
SNSSTMIDENPISKKEDSITK
NT seq 2226 nt   +upstreamnt  +downstreamnt
atgggtaattcattttcatttgaaccatatggtgaatatgatgttgaaaatgttgaaggt
aatgaaaataatgtaaatgtaaaaagtaaaattaatttatcatcagatctatttaaagaa
gaagaggaagaaagaaagaaatatcttttaagtattaaagaattagaaaataaatttaaa
ttatcagcacaagaatcaagaaaattaaaatctcataaatctgcaatcttaattcaaaaa
gtttggaggggtcattctcaaagaaaaaaatggtcattatttttgaaaaaatcacaagtt
attaaagaattattaataacagaaagagattatgttcaatttttaaaagttattgtgaat
gtttatatggtaccattaaaagaattagttagtggtaaagatagtacaatatcatcagca
accaatcaaaagatattaaagaatataaagaacgatggtggacaaaatttaggattaaat
ttagagcaaccaccattgactagtgaggaaattaagattgtattctcacaaatcgaggtg
atattattgtataattcaaaattattagagaaactttccactcggattacaaatgatcgt
tggaattattatcaaaagattggtgatgtatttttagagtttacccatttcttaaaggta
ccatatagtcattatattaccaatttcccatcagtattaaaagttttggagagtgcatca
aaaagaccatcatatgtattattcatacaagagtgtaaacatttgcctgaagttggtaaa
agggatttacaatcattcgttagtatgccagttcaacgttgtccaagatatgtattattg
ttgagggagttattaaaatttacgccctcatcagatcacgattttaaaaatatagtatca
gcattacaaggtatggaaacaattgcagatctaatcaatagacaaatgaaagaggaggaa
atctctagagaaatcattgcaatcaatgaaaagttaacaccaaaagtaaagaatctaatt
gaacctcatagacgtttaattaaagagggtgatgttaaaatttataaagcagacggtaat
gaccatgatactttcactggtacaattcgtccctcttcaatttggaaaattcaaagtcca
cgtttcagatatatctatctctttaatgatagttttatagtttcaaaaaaaactaaaaca
ctctataaagttgaacaatttgtaaatttagaatatagtactgtaatagatcattcaaaa
tcaattaaaatagttgaaactataccttcagatgatcaattaaataaatataatgtagat
aataatagttgtaataatttagaaaattcttgtaataatagtgtattaaatgattcaaat
aataataataataataataataataataataataataataataataataataataataat
aataataataataataataataataataataataataatagtgtatcagatttaaataat
gtgaatagtaataatataaataatgcgaataataatgtaaataatccaaatagtaataat
aataataatataaataatacgaataataataataatggtactacgaatagaaagatgagt
ttttcaagttttattgaaaatagtataaaaagtggtagagaaagttttagaagtagtaat
agtagtgatggtgataggtattattttaaattacacactttggactgtacattagtgatt
tgtttaccaaatgaagaagagaaagaacaatggaggagcgcatttgtaaatgtaattaat
cgagtcacagagaatgtattaagttttaatccaaaatggtcaactaatcctggtttagtt
gatagtagtggtggtggtagtagcaatagttatggaagtggaagtgctgatggctcatat
gcaacaaacttaaatattgcttctttcacatcaccttctttgagtagaatgtcaccttat
catagtaaattatcttcaccaatgcgtggaacacttttaacaaatgataatttctctttg
aaacaatcaatccaagaacttttatctttatcaaaaccaattaaaggaatggaaggtagt
tcaactatttcttcaaactattcctcttcctcctcaaattcaactatgtcatcatcaatt
tcaaattcctcaacaatgattgatgaaaatccaatatcaaaaaaagaagattcaattacc
aaataa

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