KEGG   Devosia sp. H5989: XM25_05775
Entry
XM25_05775        CDS       T04003                                 
Symbol
RecJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
deq  Devosia sp. H5989
Pathway
deq03410  Base excision repair
deq03430  Mismatch repair
deq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:deq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    XM25_05775 (RecJ)
   03430 Mismatch repair
    XM25_05775 (RecJ)
   03440 Homologous recombination
    XM25_05775 (RecJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:deq03400]
    XM25_05775 (RecJ)
DNA repair and recombination proteins [BR:deq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     XM25_05775 (RecJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     XM25_05775 (RecJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      XM25_05775 (RecJ)
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1 DUF7185
Other DBs
NCBI-ProteinID: AKR55323
Position
1214240..1216036
AA seq 598 aa
MLDERAYFLDVSRSVTGRAWVDRLDANASRLAQAIAQRTDLSEILARIVAARGVGPEEAE
SYLNPTIRDLMPDPSTLTAMDRLVARLAKAIGDRENVALFGDYDVDGACSCALMSRYLRH
FGLEPQVYIPDRIFEGYGPNVAAIDKLIDAGATLIITLDCGTVSDAPIAHARSRGVDVLV
IDHHLSDFELPEATAIVNPNRPDDVSGLGYLCAAGVTFMVLVAANRELRNLGRAGLPDLM
AMLDLVALATVCDVVPLKGLNRAFVVRGLEVARRGNNRGISALALAARVNGPLNPYHLGF
LIGPRINAGGRIGDAALGTRLLTIEDEHEALAIAARLDELNVERQRIEVEAVEEAARVAE
AEIGNGEGPPVLVLASENWHAGVVGLIAARLRERFERPAFAIALGPDGTGTGSGRSMPGV
DLGRAVIEAVEAGIIPKGGGHAMAAGVTVRTGQLGPFRAHMAQALTAQVAVARAATALQV
DAALTARGASPEFVHDLERAGPFGSGNPTPVFVFPAHKAKFAEVVGQGGHVRFTLASDDG
ARLKGIAFRAAGQPIGDVLLNGGNDTPLHIAGTLGIDHWQGREQVQIRVVDVASPASR
NT seq 1797 nt   +upstreamnt  +downstreamnt
atgctcgatgaacgcgcctatttcctggacgtttcccgctcggttacgggacgcgcctgg
gtggaccggttggatgccaatgcctcgcggctggcccaggccatagcgcagcgcaccgac
ctttccgaaatcctggcgcggatcgtggcggccaggggagtggggccggaggaagccgaa
agctacctcaaccccaccattcgggacctgatgcccgatccctccacgctcaccgccatg
gaccggttggtggcgcgcctggccaaggccatcggcgatcgcgagaacgtggccctcttc
ggcgactatgacgtggacggagcctgctcgtgcgccctcatgagccgctacctgcgccat
ttcgggctcgagccgcaggtctatattccggaccgcatctttgaaggatacgggcctaac
gtcgccgccatcgacaagctgatcgatgcgggcgccaccctcatcattactctggactgc
ggcacggtgagcgacgcgccgatcgcccatgcgcgctcgcggggcgtagatgtgctggtc
atcgaccatcacctttcggacttcgaactgcccgaggcgaccgccattgtcaatccgaac
cggcccgacgacgtctccggcctcggctatctctgcgcggcgggcgtgaccttcatggtg
ctggtcgccgccaaccgcgagttgcgcaatctcggccgcgctggcttgccggacctgatg
gcaatgctggacctcgtggcattggcgaccgtttgcgatgtcgtgccgctcaaggggctc
aaccgcgccttcgtggtgcgtggcctcgaggtcgcccggcgtggcaacaatcgcggtatc
tcggccctggcgcttgccgcccgggtcaacgggccgctcaatccctaccacctcggcttt
ctcatcggcccgcgcatcaatgccggcgggcgcatcggcgacgccgccctcggaacgcgg
ctgctcactatcgaggatgagcacgaggcgctggccatcgcggcacggctcgatgaactc
aacgtcgagcggcagcgaatcgaggtggaggccgtcgaggaggccgcccgcgtcgccgag
gcggaaatcggcaatggcgaggggccgcccgtgctggtgctcgcctcggagaactggcac
gccggcgttgtcggcctcattgcggcgcggctgcgcgaacgcttcgagcgcccggctttc
gccatcgcgctcggacccgacggcaccggcaccggctcggggcgttcgatgcccggcgtc
gacctggggcgtgctgtcatcgaggctgtcgaggctggaatcatccccaagggcggcggc
catgccatggcggcgggcgttaccgtgcgcaccggccagctcggccccttcagagcccac
atggcccaggcgttgaccgcccaggtcgcggtggcccgtgccgctacggcgctgcaggta
gatgcggccctcacggctcgcggcgcctcgccagagttcgtgcatgacctcgaacgcgcc
ggtcctttcggttcgggcaaccccaccccggttttcgtgtttcccgcccacaaggccaag
ttcgcagaggttgtggggcagggcgggcatgtgcgtttcacgctcgcctcggatgacgga
gcccgactcaaggggatcgccttccgcgccgccggccagcccattggcgacgttctgctc
aatggcggcaacgataccccgctccatatcgcgggcactttgggaatcgatcactggcag
ggacgcgagcaggtgcagatccgggtggtcgacgtggcgtcgcccgcaagtcgttag

  All links  
Gene (15)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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