KEGG   Dendroctonus ponderosae (mountain pine beetle): 109540773
Entry
109540773         CDS       T04899                                 
Name
(RefSeq) 5'-3' exoribonuclease 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dpa  Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03008  Ribosome biogenesis in eukaryotes
dpa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dpa00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    109540773
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109540773
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpa03019]
    109540773
   03009 Ribosome biogenesis [BR:dpa03009]
    109540773
   03016 Transfer RNA biogenesis [BR:dpa03016]
    109540773
   03036 Chromosome and associated proteins [BR:dpa03036]
    109540773
Messenger RNA biogenesis [BR:dpa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     109540773
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     109540773
Ribosome biogenesis [BR:dpa03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    109540773
Transfer RNA biogenesis [BR:dpa03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    109540773
Chromosome and associated proteins [BR:dpa03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    109540773
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D1 XRN1_D2_D3 SH3_12 Dicer_dimer
Other DBs
NCBI-GeneID: 109540773
NCBI-ProteinID: XP_019764794
UniProt: A0AAR5PUV6
Position
Unknown
AA seq 1501 aa
MGVPKFFRYISERYPCLSELVREYQIPEFDNMYLDMNGIIHMCSHPDDNNPHFRITEERI
FQDVFHYIEVLFRMIRPQKLFFMAIDGVAPRAKMNQQRGRRFRAAKDAEKQEAEAQKKGE
TLPSEARFDSNCITPGTVFMARLHEQLKYFCVDKISTDPLWRDVQVILSGHETPGEGEHK
IMDYIRYLRAQPGYNPNTRHCLYGLDADLIMLGLCTHEPHFSLLREEVKFGKKSTKRQSV
PEEITFFLLHLSLMREYLELEFSPVRKQLKGFEYDFEKIIDDWVLMGFLVGNDFIPHLPN
LHIANGALPLLYKAYMAVLPTLDGYINEAGTLNLARFEKFMQKLAEFDLENFEEVRDDLT
YMEAKTGRKFNAHTKVSTVRQLEEWQADENEEAIELECLEPRAKPSRDPALDALIQATDD
LDIDSSEDDSDDIDEDERAFRNYKKEYYMNKLEYANVTPEVLRSQAEGYVRAIQWNLHYY
YNGCCSWSWYYPHHYAPYISDIKGFADLKLEFELGKPFRPFEQLLAVLPAASKALLPEVY
HKLMTSEESSIGKYYPEDFQTDKNGKRQEWEAVVLIPFMDEKLLLQAMAPCNKELSEEER
RRNSQGPMLACTYTAVDLGKYDAPLYFQTINHNHCKVKLVNIENIRVPIENLVKGAYPGA
NMDVYYPGFPTLKHLKYTAKLKKSRVKVFEQPSRYESMIIQVLQDEEKNQEEIPVELLGA
NVFVGWPHLVEGRIVSISNAKTRYVSMGTANQYNTEDQKDASMFRNESAGIIERYKNRLG
IEVGEVKAMCQVQVMIGRKYELTPNGALTLEKQFSEFTANYPLQTIVSGIESYESHRTLF
RNVQDVFPEGEICFTLGNPYYGAQGIVIDTKELAKIGRIKVCVVISDEPDFESVREIQNE
VARSYRTLYNAASILGMAHFLYSRVTGSIFVETPDGEGGLKNINIGLDLKLNKKNKETPG
YTRKLASTWLYTDKCTDLVREYAEKFPEVFAYLVSNASNENINVEHLFTGDDWDEKLKTL
QIWLKNLPTASLEKQACGAETTDAKVVEEVEKIIDNFPKTANSKKITMSVKPSFLYKPEL
QSGTLAPDPKMQVEIFDRIVNTRKGFSVPFGLKGTVISIIKSSSKSERDTMYDVVFDKAF
KDGMELNCSPGRGYRLPRTAFINISHGKRMYEQRIGRNGALADKSAKNQGTPWQNTNGQK
FFNQFMNNSAQRHTDKTVPEKPGQGSAFAPFHHSSRNQLLEDQASKPSDRGNGISTERFE
PREPHTAKEAKLAGKSERIRIFQRPKDDPHWQPDLIESRKTAPTTKSNATPETSCLNVSF
EELAKHISSQPASIRLLTYYQSNGLGVPRYQFFQAGSKFKAQIALSNGLVVTSEPMSSKE
KATESVASDVLQRLMKKGETSDAVLPIPPKTWVEPTKEKDQALMAALQNPFLPTQVIKRQ
TSRPSAGSLEGVGSKKTGAANVNENGHKTSSGHDETKPAPNSAQQRREKKSRIAANFLLK
R
NT seq 4506 nt   +upstreamnt  +downstreamnt
atgggagttccgaaatttttccgctatatcagcgagcgctacccttgcctgagtgagctc
gtgcgcgaatatcagattccagagttcgacaacatgtacctggacatgaacgggatcatc
cacatgtgctcgcatccggacgataacaatccccatttccgcatcaccgaggagcggatt
ttccaggacgttttccactacattgaggtactgtttcggatgatcagaccccaaaagttg
ttcttcatggctattgatggggtggccccgcgggccaaaatgaaccagcagagaggccga
cggtttagggcggcaaaggatgcggagaaacaggaggccgaggcgcaaaaaaagggcgaa
actttgccgagcgaagcccgatttgattccaattgtattacgcctggaacagtatttatg
gctcggctgcatgagcagctgaagtatttctgcgtggataaaatttccactgatcccctt
tggagggatgttcaagtgattctatctggacatgagactcctggcgaaggtgaacataaa
atcatggattacatcaggtatctaagggcgcagcccggctacaaccccaacacgcggcat
tgcttgtatggactggacgccgacttgattatgttgggtctttgcacacatgagccccat
tttagcttgctgagagaagaggtgaaattcggcaaaaaatccaccaaaagacagtcagtt
ccggaggaaatcacgtttttcctgctgcacttgtccttaatgagagagtacctagagctg
gagttcagcccggtcaggaagcaactcaaggggtttgaatacgattttgagaaaatcatt
gatgactgggttttaatggggtttttagtaggaaatgactttatccctcacttacccaac
ttgcatatcgccaacggggctctgcctctcctctacaaggcctacatggcagtccttccc
acattggacggctacataaatgaggcaggcacgttgaatctggcaagattcgaaaaattc
atgcaaaagttggctgaatttgatttggagaacttcgaagaagtcagggatgatttaaca
tacatggaggcgaagactggcagaaagttcaacgctcacaccaaagtttcgactgtaagg
cagctggaagaatggcaggcggatgaaaatgaagaggccatagagctggaatgtcttgaa
ccaagggcgaaaccttcaagagaccccgctttggatgctttaatccaagccactgacgac
ctagacatagactctagtgaagatgatagtgacgatattgatgaggacgagcgggctttc
cgcaactacaaaaaggaatattacatgaacaaactggaatacgcaaacgtcactcctgaa
gtgctgcgcagccaagccgaaggctacgttagagctatccaatggaaccttcactattat
tataatggctgttgttcttggtcttggtactaccctcatcattacgcgccctacatatcg
gacatcaaaggatttgccgatttgaagctggaattcgagttaggcaagccgtttaggccc
tttgagcaacttctagcagtgcttccggctgccagcaaagcccttctgccggaagtttac
cacaagctgatgacgagcgaggagtcatcaatcgggaaatattacccagaagactttcaa
acagataaaaatggcaaacggcaggaatgggaggctgtggttttaatccctttcatggac
gagaaactgcttcttcaagcaatggccccttgcaacaaggagctaagcgaggaagaacga
cgaagaaacagtcagggcccaatgttggcctgtacctacacagctgtggatttgggcaaa
tacgacgccccactttacttccaaaccatcaatcacaaccactgtaaagtcaaactggtt
aatatcgaaaacatccgcgtccctatagaaaatttggtaaaaggcgcctatccaggcgcc
aatatggacgtctattatccaggctttcccactttgaagcatctgaaatataccgccaaa
ctgaaaaagtcccgcgtcaaagtcttcgagcagccgagccggtacgaaagcatgatcatc
caggtactgcaggacgaggaaaagaatcaggaagaaattcctgtggagcttttaggggca
aatgtctttgtgggatggccgcatctagttgaaggaagaatagtatcgatttcaaacgct
aaaacgcgttacgtgagtatgggaaccgcaaatcaatacaatacagaagaccaaaaggat
gcgtcgatgttccgcaacgaatcagccggtattattgagagatacaaaaaccggctgggg
atcgaagtgggcgaagtcaaagctatgtgccaagttcaagtgatgatagggagaaagtac
gaactcacccccaatggcgccctaacgttggaaaagcaattttcggaattcaccgctaac
tatcccttgcaaaccatcgtatcgggcatcgagagctacgagtcgcatcgaacgttgttc
cgcaatgttcaggacgtgttccctgagggtgaaatctgcttcactttgggcaatccttat
tatggggcgcaaggaatcgtgatcgatacgaaagaactggcgaaaattggacggattaag
gtgtgcgttgtgatctcagatgagccggattttgaaagcgtgcgcgaaatccagaacgaa
gttgcccgaagctatagaacgctgtataatgccgctagtatactgggaatggcccacttc
ctgtattcccgtgtgacgggatcgatatttgttgaaacccccgacggcgaaggaggtctg
aagaacatcaacatcggcctcgacctcaaactcaacaagaagaacaaagaaacacctgga
tatacccgaaaactggccagcacttggttatacaccgataagtgcaccgatttagttcgg
gagtacgctgaaaagtttcccgaagttttcgcctacttggtgagcaacgctagcaatgaa
aacatcaacgtcgagcatcttttcactggagatgattgggatgaaaagctaaaaaccctg
caaatatggctgaaaaacctccctacagccagcctggagaagcaggcctgcggcgccgaa
acaactgatgcgaaggtggtggaagaagttgaaaaaatcatcgacaacttcccgaaaaca
gcgaattccaagaaaatcacaatgagcgtgaagccttcgtttttgtacaaaccggaactt
cagtcaggcactttggctcccgatccgaaaatgcaagtggaaatcttcgatcgcatagtg
aacacgagaaaaggattcagcgtgcctttcggcttaaaaggaacggtgatttccatcatt
aaatcctcctctaaaagtgaaagagacactatgtatgatgtggtgtttgataaggctttt
aaggatggaatggagctgaactgttcacctgggcgaggctatcgcctgcccagaacagcc
tttatcaacatttcccacggcaaaaggatgtacgagcagcgaataggccgaaatggcgcg
ttagcggacaagtcggcaaagaaccagggaaccccatggcaaaacaccaacggccagaag
tttttcaaccaattcatgaacaattcggcgcaacgccatacagacaaaacagtcccggaa
aagcccggccaaggatcggcgttcgcgcccttccatcacagcagcaggaatcagttgctc
gaagatcaagcgtccaaaccatctgatcgagggaacggtatcagtactgagcgatttgaa
ccgagggaaccgcacactgcaaaagaagcgaagctggcagggaaaagtgagcgcatcaga
attttccagcgacccaaagacgacccacattggcaacccgacttgatagaaagcagaaag
actgcgcctaccactaagagcaacgcaacccctgaaacgagctgcttgaatgtgtctttt
gaagaactggcgaaacacatttcaagccaaccggcaagcattagactcttaacctactac
caatcgaacggtttgggagtaccacggtaccagttcttccaagcagggtcgaaattcaag
gcccaaatcgccctttctaacggattagtcgttactagtgaaccaatgagttcaaaggaa
aaagccactgaaagcgtggctagtgacgttttgcaacggttaatgaaaaagggcgaaact
agcgatgcagtcttgccgattccaccgaaaacttgggtggaaccaactaaggaaaaagac
caggccttgatggcggccctgcagaacccatttttgccgacgcaggttattaaaaggcaa
accagcaggcctagcgccggaagccttgaaggggttggttcgaaaaaaacaggcgccgcc
aatgttaacgaaaacggtcataaaacttcgtctggccacgatgagaccaaaccggccccc
aattccgcccaacagagaagggagaagaaatcccgaatagctgccaactttctgttgaaa
cgttaa

  All links  
Gene (60)   
   RefGene (57)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (69)   

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