KEGG T01004: 393593

Danio rerio (zebrafish): 393593

Entry

393593            CDS       T01004

Symbol

papolg

Name

(RefSeq) poly(A) polymerase gamma

K14376

poly(A) polymerase [EC:2.7.7.19]

Organism

dre Danio rerio (zebrafish)

Pathway

dre03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:dre00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    393593 (papolg)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    393593 (papolg)
Enzymes [BR:dre01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     393593 (papolg)
Messenger RNA biogenesis [BR:dre03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     393593 (papolg)

SSDB

Motif

Pfam:

PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 MTPAP-like_central Nrap_D2 DUF4269

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

ZFIN:

Ensembl:

UniProt:

Position

13:complement(29042647..29060330)

AA seq 744 aa
MREMSATGNSTLGGQQPRKHYGITSSISLAFPREIDHIYTQKLTEAMKPFGVFEGEDELN
HRLAVLGKLNSFVKEWISEISESKNLPPSAVANVGGKIFTFGSYRLGVHTKGADIDALCV
APRHVERTDFFSSFFEKLKRHDEIKDLRAVEDAFVPVIKFKFDGIEIDLLFARLALQSIP
DNLDLRGDSLLRNLDIRCIRSLNGCRVTDEILYLVPNKENFRLTLRAIKLWAKRRGIYSN
MLGFLGGVSWAMLVARTCQLYPNAVAATLVHKFFLVFSKWEWPNPVLLKQPEDSNLNLPV
WDPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTIMNEEFKNGLTVTDEILQGKADWS
KLFEPPNFFQQYRHYIVLTASASTEENHLEWIGLVESKIRVLVGNLERNEYITLAHVNPQ
SFPGSKENRNENDFVSMWFIGISFKKLDNSDCVNIDLTYDIQSFTDTVYRQASNINMLKD
GMTIEATHVKKKQLHHYLPPELVQRKKKSLGDINRSSNGGGSKRCSLDSSQLDSSRDTDI
GTPFSSPTPISKPCQPASTPEDNSSSPPQHPVLVFMDSPPASELSQPKPEQGMSIPVIGS
KPITTPVAKPPTPPAGNTIPTVVGRSVIPRLAASSPELANSVNGAPKRPHSPSLEDPPKR
HKDTEVFSDDSAFKEPYPPSSNGLDGDEGQTVEALAETKAMPIPTIDTSRSQRLPSKELP
DASSPIPTSNLRVIKNSIRLTLNR

NT seq 2235 nt +upstreamnt +downstreamnt
atgagagagatgtcagcgactggtaacagtacgcttggcgggcagcagcctcggaaacat
tatggcatcacatcttcaatcagcctggcatttcccagagagatagaccatatctacact
cagaagctcactgaggctatgaaaccatttggagtgtttgaaggtgaagatgagctcaat
cacaggcttgcggttcttgggaagctaaattcgtttgtgaaggagtggatttctgaaatc
agtgaatcaaagaatcttccaccgtcagcagtagcgaatgttggtggcaaaatctttacg
tttgggtcctataggttgggagtgcacacaaaaggtgctgatatagatgctttgtgtgtt
gccccacgtcatgttgaaagaacagactttttttcatccttctttgaaaaactaaaacgg
catgatgagattaaggacctacgcgctgtggaagatgcatttgtaccagtgatcaagttc
aagtttgatggcatcgagattgatctgctgtttgccagacttgctctacagtccattcct
gataacctggacctgagaggagactctctcctcagaaacttggacatcagatgtattcgc
agtctaaatggttgtcgtgttacagatgagatcctatatttggtgcctaataaagagaat
ttcagattaacattaagagcgattaaactgtgggccaaacgccgtggaatctattccaac
atgctaggctttctcggcggagtttcctgggctatgctggtggccagaacatgtcagctt
tacccaaatgctgttgccgccacgcttgtgcataagttctttctggtcttctctaaatgg
gaatggccaaaccctgtgcttttaaaacaacccgaagacagcaatttgaatctgccggtc
tgggatccacgggtgaatccatcagaccggtatcacttaatgccaatcatcactcctgca
tatccacaacagaactccacctacaacgtgtccacttccacacgcactatcatgaatgag
gagttcaagaatggtctcactgttacagatgaaattcttcagggtaaagccgactggtcc
aagttgtttgaacctcccaactttttccaacagtataggcattacattgtcctcactgcc
agtgcatccactgaggaaaaccatttagagtggattggattggttgaatcaaagataaga
gtgttggttggaaacttggagcgaaatgaatacatcactcttgcccatgtcaatccacag
tcttttcctgggtcaaaagagaatcgcaatgagaatgattttgtttccatgtggtttatt
ggaatcagctttaaaaaactggacaattctgactgtgtgaatattgacttgacctacgac
attcagtctttcacagatactgtttatagacaggccagcaacatcaacatgctgaaggat
ggcatgacgattgaggctacacatgtgaagaagaaacagctgcatcattacctgcctcct
gagctggtgcagaggaaaaagaagagtttgggagatataaaccggagctcaaatggtggc
gggtcaaagcgctgctctctggatagcagtcagctggacagctccagggacacagacatt
ggcacgccattcagctctcctacacccatcagcaaaccatgccagccagcctccacacct
gaagacaatagtagtagcccaccccagcatccagttcttgtgttcatggacagcccacca
gcatcagaactgtctcaaccaaaaccagaacaaggaatgtccattccagtcatcggctcc
aagcccatcaccactccagttgccaagcccccaacacctccagctggcaacactattcct
acagtggtgggtcgcagtgtaataccacgacttgccgcttcctcccctgaactggccaac
agtgtaaatggagcgccaaagagacctcactctccatctctggaggacccacctaagagg
cacaaagacacagaggtgttctctgatgactctgcgtttaaagagccgtatcctccctct
agcaatggcttggatggtgacgagggacaaacagtggagactctcgcagaaaccaaagct
atgccaataccaacaattgatacatcaagatcacagagactccccagcaaagagcttccc
gatgcatcttctccaatccccacaagcaaccttcgcgtgattaaaaactcaatcagactc
actcttaaccgataa

All links

Gene (39)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (60)   

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