KEGG T06560: HH213

Duganella dendranthematis: HH213_09480

Entry

HH213_09480       CDS       T06560

Symbol

gyrB

Name

(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

dug Duganella dendranthematis

Brite

KEGG Orthology (KO) [BR:dug00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dug03032]
    HH213_09480 (gyrB)
   03400 DNA repair and recombination proteins [BR:dug03400]
    HH213_09480 (gyrB)
Enzymes [BR:dug01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     HH213_09480 (gyrB)
DNA replication proteins [BR:dug03032]
Prokaryotic type
  DNA Topoisomerases
   HH213_09480 (gyrB)
DNA repair and recombination proteins [BR:dug03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      HH213_09480 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook Toprim_4 HATPase_c_3

Other DBs

NCBI-ProteinID:

QJD90288

Position

2043012..2045504

AA seq 830 aa
MSEENAVPAVKNDEYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDE
SLAGYCTEIHVTIHSDNSISITDNGRGIPVGLKMDDKHEPKRSAAEIVLTELHAGGKFDQ
NSYKVSGGLHGVGVSCVNALSKLLRVTIRRDGKVHEMEFVRGVAQDRQLETRDGVLVSPI
KVIGETDKRGTDVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVNIKLTDQRTGKEEL
FAFEGGTRGFVEYINKAKTVLHPTVFQATGDRMSDQNTNISVDVSMQWNDAYNEQVLCFT
NNIPQRDGGTHLTGLRAAMTRVINKYIDEHDFAKKAKVEISGDDMREGLTCVLSVKVPEP
KFSSQTKDKLVSSEVRGPVEEIVAKTLSDYLQEKPNDAKIICGKIVEAARAREAARKARD
LTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKV
LNVEKARFEKMLSSEQITTLIATLGTSIGPDEFNVEKLRYHRIIIMTDADVDGAHIRTLL
LTLFYRQMPELVERGHIYIAQPPLYKVKAGRDERYLKDDAEEATYMMNVALNTAVLTPRE
GAEPIQGEALGELVRQFNLANVIMTRLTRMIDRAALTAIMTGVQLDLSTQAAAEASARAL
EENINDIAVKVSVRSDELNEQHLLWVERMHHGNVKVSSIDADFVRSADYRVLADAATTFT
GLLGEGAYVRRGEGERTKESAVVDFHQAMQWLRDESERVVSKQRYKGLGEMNPEQLWETT
MDPTVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIENNALRAGNIDV

NT seq 2493 nt +upstreamnt +downstreamnt
atgtccgaagagaatgcagtccccgcggtaaagaatgatgaatacggcgcctcctcgatc
cagatcctggaaggtctggaagcagtccgcaaacgtcccggcatgtacatcggcgacacc
tcggacggcaccggtctgcaccacctggtgtttgaggtgctggacaactcgatcgacgaa
tcgctggccggctattgcaccgaaatccacgtcaccatccactccgacaactcgatctcg
atcaccgacaacggccgcggcatcccggtcggcctgaaaatggacgacaagcacgagccg
aagcgctcggcggccgaaattgtgctgaccgaactgcacgccggcggcaagttcgaccag
aactcgtacaaggtctccggcggcctgcacggcgtcggcgtgtcgtgcgtcaacgccctg
tccaaactgctacgcgtgaccatccgccgcgacggcaaagtgcacgaaatggaattcgtg
cgcggcgtggcgcaagaccgccagctggaaacccgcgacggcgtgctggtgtcgccgatc
aaggtcatcggcgaaaccgacaagcgcggcaccgacgtccacttctgggccgacgaagaa
atcttcacccacgtcgaattccactacgaaatcctggccaagcgcatccgcgaactgtcg
ttcctgaataacggcgtcaacatcaagctgaccgaccagcgcaccggcaaggaagaactg
ttcgcgttcgaaggcggcacacgcggcttcgtcgaatacatcaacaaagccaagaccgtg
ctgcacccgaccgtgttccaggccaccggcgaccgcatgtcggaccagaacaccaacatc
tcggtcgacgtctcgatgcagtggaacgacgcctacaacgaacaggtgctgtgcttcacc
aacaacatcccgcaacgcgacggcggcacccacctgaccggcctgcgcgcggcgatgacc
cgcgtcatcaacaaatacatcgacgagcacgacttcgccaagaaggcgaaagtggaaatt
tccggcgacgacatgcgcgaaggcctgacctgcgtgctgtcggtcaaagtgcccgagccg
aaattctcgtcgcagaccaaggacaagctggtgtcgtccgaagtgcgcggcccggtcgaa
gagatcgtcgccaagacgctgtcggactacctgcaggaaaaaccgaacgacgccaaaatc
atctgcggcaagatcgtcgaagcggcgcgcgcgcgtgaagcggcccgcaaggcccgcgac
ctgacccgccgcaaaggcgtgatggacggcctcggcctgtcgtcgaaactggccgactgc
caggaacgcgacccggcgctgtgcgaactgtacatcgtcgagggtgactccgcaggcggc
tcggccaagcaaggccgtgaccgcaagttccaggcgatcttgcctctgcgaggcaaagtc
ctgaacgtggaaaaggcgcgctttgaaaaaatgctgtcgtcggaacagatcaccaccctg
atcgccaccctcggcacctcaatcggcccggacgaattcaacgtcgaaaagctgcgctac
caccgcatcatcatcatgaccgatgcggacgtcgacggcgcccacatccgcaccctgctg
ctgacgctgttctatcgccagatgccggaactggtcgaacgcggccacatctacatcgcc
cagccgccgctgtacaaggtcaaggccggccgcgacgagcgctacctgaaggacgacgcc
gaagaagcgacctacatgatgaacgtggcgctgaacaccgccgtgctgacgccgcgcgaa
ggcgccgagccgatccagggcgaagcgctgggcgaactggtgcgccagttcaacctggcc
aacgtcatcatgacgcgcctgacgcgcatgatcgaccgcgccgcactgaccgccattatg
accggcgtgcagctggacctgagcacgcaggcagccgctgaagcttcggcgcgcgcgctg
gaagagaacatcaacgacatcgccgtcaaagtctcggtgcgttcggatgaactgaacgaa
cagcatttgctgtgggtcgagcgcatgcaccacggtaacgtcaaagtcagctcgatcgac
gccgacttcgtgcgcagcgccgactaccgcgtgctggccgacgccgccaccaccttcacc
ggcctgctgggcgaaggcgcctacgtgcgccgcggcgaaggcgagcgcaccaaggaatcg
gccgtggtcgacttccaccaggcgatgcagtggctgcgcgacgagtcggaacgcgtggtc
tcgaaacagcgctacaaaggtctgggcgagatgaacccggaacagctgtgggaaaccacc
atggacccaaccgtccgccgcttgctgaaggtgcagatcgaggatgcgattgctgcggat
cagatcttcaccaccttgatgggtgatgacgtggaaccacgccgcgcgttcattgagaac
aatgcgctgcgtgcggggaatattgacgtctaa

All links

Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (8)   
   Pfam (8)   
All databases (9)   

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