KEGG   Dyadobacter chenhuakuii: NFI80_21965
Entry
NFI80_21965       CDS       T08460                                 
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dyc  Dyadobacter chenhuakuii
Pathway
dyc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dyc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NFI80_21965 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dyc03400]
    NFI80_21965 (ligD)
Enzymes [BR:dyc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NFI80_21965 (ligD)
DNA repair and recombination proteins [BR:dyc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NFI80_21965 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S AAA_assoc_C
Other DBs
NCBI-ProteinID: USJ30511
Position
complement(5252229..5253128)
AA seq 299 aa
MKKKAELTHLDKIYWPDEQITKGELLEYYSEIAPFIIPYLKNRPLSLRRNPNGINEPSFF
QKDAGDNVPDWIKTEEILAESTGKMVNYFICNDLETLLYIANMGCIEMNPWNSTINKLDN
PDYIVMDIDPSDKNTFEDVVDVALVIKEILDQTGMTGFCKTSGSSGLHIYIPFGKKYTYD
ESRDFAEILATLVVERLPELTTLERSLSKRRKDQIYVDFLQNRIAQTLASAYSVRPKPGA
TVSAPLEWSEVKHGLSPRDFTIKNMLKRVEEKGDLFKGVLGKGIDMQKALQKMEALHGE
NT seq 900 nt   +upstreamnt  +downstreamnt
atgaaaaagaaagcggaactgacgcacctggacaaaatctattggccggacgagcagatt
acgaaaggtgaattactggaatattacagtgaaatagcgcctttcattatcccttatttg
aaaaatcgccccttatcgctccgccgcaatccgaatggcatcaacgaacccagctttttc
cagaaagatgccggtgacaatgttccggattggatcaaaacggaggagatcctggcagaa
tcgacaggaaaaatggtaaattatttcatttgcaacgacctcgaaacgttgctttacatt
gccaatatggggtgtattgaaatgaatccatggaattccaccattaataagctcgataac
cccgattacattgtgatggacattgacccgtccgataaaaatacatttgaagatgtggta
gatgttgcgctggtgatcaaggagatcctcgatcagactggcatgacgggattctgcaaa
acttccgggtccagcgggctgcacatttacattccttttggcaagaaatatacttacgac
gaaagtcgtgattttgccgaaatcctggcaacgcttgttgtagaacgtcttcctgagctc
accacactggaacggtcgctttcgaaacgcaggaaagatcagatttatgtcgattttttg
cagaacaggatcgcgcagacactcgcatccgcatatagcgtacgcccgaaaccaggcgca
accgtatccgcgccactcgaatggagcgaggtgaaacatggacttagccccagggatttt
accattaaaaacatgctgaaacgggtcgaggagaaaggtgatctgttcaaaggggtttta
ggcaaaggcattgacatgcagaaagcattacaaaaaatggaggcactgcacggggaataa

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (4)   

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