KEGG   Edwardsiella hoshinae: A9798_14015
Entry
A9798_14015       CDS       T04508                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
eho  Edwardsiella hoshinae
Pathway
eho02020  Two-component system
eho02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:eho00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    A9798_14015
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    A9798_14015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:eho03021]
    A9798_14015
Transcription machinery [BR:eho03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     A9798_14015
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: AOV97953
UniProt: A0A376DL54
Position
3167554..3169023
AA seq 489 aa
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQQALESNPLLEQLEPNEEAGDDG
AVLEQPQESAVTRDDADPLDSREALEQREMPDELPLDASWDEIYTAGTPSGTGTDYHDDE
LPVFQGETTQTLQDYLMWQVELTPFSDTDRAIATAIVDAVDDTGYLTASLAEILESLGDE
HLLPEEIEAVLKRIQRFDPVGVAARDLRDCLLVQLSQFSDDTPYLNEARSIVDRHLELLG
NHDFRNLMRSTKLKEEVLKAAMQLIQSLDPRPGLSINTSESDYVIPDVLVHKHQQRWVVE
LNQDSVPRLRINQHYAALGAQARNDNDSQFIRSNLQEAKWLIKSLESRNDTLLKVSRCIV
EQQQAFFEHGPEAMKPMVLADIAQQVEMHESTISRVTTQKFLHSPRGIFELKYFFSSHVS
TDDGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTLLADQGIMVARRTVAKYRESLSIP
PSNQRKQLV
NT seq 1470 nt   +upstreamnt  +downstreamnt
atgaagcaaggcttgcaactcagactcagccagcagctggccatgacgccgcaactgcaa
caggctattcgcctgttgcagctctcaacgctggaattacagcaagagatccaacaggcg
ttagaaagcaatccgctgctggagcaactggagcccaatgaggaagccggcgacgacggt
gccgttctcgaacagccgcaggagagtgccgtcacgcgcgatgacgccgatccactggat
agccgcgaggcattggagcaacgggaaatgccggacgaactgccactcgatgccagctgg
gacgagatctataccgccggcacaccctcaggtacgggaaccgattatcacgatgacgag
ttgccggtgttccaaggcgaaacgacgcaaacactgcaagactatctgatgtggcaggtt
gaactgaccccattcagcgataccgatcgggcgatcgccacggccatcgtcgacgcggta
gacgataccggctatctcaccgcctcactggcagagatcttggagagtctcggagacgag
catctcttgccggaggaaatcgaagccgttctcaagcggattcaacgcttcgatccggtg
ggcgtcgccgcgcgcgatctgcgcgattgcctgttggtgcagctctcccaattttccgac
gacacgccctatctcaacgaggcgcgcagcatcgtcgatcgccatcttgaactcctggga
aatcacgatttccgaaatctgatgcgttcgactaagctaaaagaagaagtgctcaaggcg
gcaatgcaactgattcagagcctcgacccacggccgggactctccatcaataccagcgag
tctgactatgtcatccccgatgtgttggtccataaacatcagcagcgctgggtagtcgag
ctcaatcaggatagcgtaccgcgcctgcgcatcaatcagcattacgccgcgttgggtgcc
caagcgcgtaacgataacgacagccagttcatccgcagtaatctgcaagaggcgaagtgg
ctgatcaagagtctggagagccgtaacgataccctgctgaaggtatcgcgttgtatcgta
gagcagcagcaggcatttttcgaacatggaccggaggcgatgaaaccgatggtgctggcc
gatattgcccagcaagtcgaaatgcacgaatcaacgatctcacgcgtgaccactcagaag
tttctgcacagtccgcgtgggatctttgaactgaaatatttcttctccagccacgtcagc
actgatgacggcggtgaggcctcatccacagcgatccgtgcgctggtgaagaaactgatc
gcggcggaaaatccggcgaaaccactgagtgatagcaaacttaccacgctattagctgat
cagggtattatggtcgcccggcgtaccgtcgctaaatatcgagagtctttgtccattcca
ccgtccaatcagcgcaaacagctggtgtga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (6)   

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